Douglas, thank you very much again. So I can assume it is the lGI for the area (in this case the lobe)?
Thank you again! On Wed, Apr 18, 2018 at 11:48 PM Douglas Greve <dgr...@mgh.harvard.edu> wrote: > The "intensity" is the mean value of the input (lh.pial_lgi in this case) > averaged over vertices. If you wan the total number, multiply it by the > number of vertices or re-run with --accumulate. The area is the surface > area of the entire lobe. > > On 4/18/18 3:23 PM, Fernanda Hansen P. de Moraes wrote: > > Sorry, my mistake. > > mri_segstats --annot DA011 lh lobesStrict --i DA011/surf/lh.pial_lgi --sum > lh.lobesStrict.annot.pial_lgi.stats > > On Wed, Apr 18, 2018 at 4:13 PM Douglas N. Greve <dgr...@mgh.harvard.edu> > wrote: > >> What is your command line? Also, please remember to post to the list >> >> >> On 04/18/2018 02:10 PM, Fernanda Hansen P. de Moraes wrote: >> > Dear Douglas, >> > >> > thank you. >> > >> > The code worked, but I didn't understand the result very well. What >> > means intensity? The area, is the ara from the piall_lgi surface >> > (outer surface)? >> > >> > Thank you again >> > >> > On Tue, Apr 17, 2018 at 1:07 PM Douglas Greve <dgr...@mgh.harvard.edu >> > <mailto:dgr...@mgh.harvard.edu>> wrote: >> > >> > If you run it with --help you will see an example >> > >> > >> > On 4/16/18 7:16 AM, Fernanda Hansen P. de Moraes wrote: >> >> Thank you, Douglas, >> >> >> >> do you have any suggestions on how to make you work? >> >> >> >> Fernanda >> >> >> >> >> >> >> >> On Fri, Apr 13, 2018 at 5:56 PM Douglas Greve >> >> <dgr...@mgh.harvard.edu <mailto:dgr...@mgh.harvard.edu>> wrote: >> >> >> >> that should work, except the command line is not quite right >> >> >> >> >> >> On 4/13/18 4:22 PM, Fernanda Hansen P. de Moraes wrote: >> >>> Good night, >> >>> >> >>> does anyone know if it is possible to calculate the lGI for >> >>> the ?h.lobesStrict.annot? And if it yes, how can I do it? >> >>> >> >>> I've already tried to use: >> >>> >> >>> /mri_segstats --annot subjxx/label/lh.lobesStrict.annot --i >> >>> $SUBJECTS_DIR/subjxx/surf/lh.pial_lgi --sum >> >>> lh.lobesStrict.annot.pial_lgi.stats/ >> >>> >> >>> Thank you! >> >>> -- >> >>> Fernanda Hansen P. de Moraes >> >>> Física Médica | Instituto D'Or de Pesquisa e Ensino | Rede >> >>> D'Or São Luiz >> >>> >> >>> >> >>> _______________________________________________ >> >>> Freesurfer mailing list >> >>> Freesurfer@nmr.mgh.harvard.edu >> >>> <mailto:Freesurfer@nmr.mgh.harvard.edu> >> >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> >> _______________________________________________ >> >> Freesurfer mailing list >> >> Freesurfer@nmr.mgh.harvard.edu >> >> <mailto:Freesurfer@nmr.mgh.harvard.edu> >> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> >> >> >> The information in this e-mail is intended only for the >> >> person to whom it is >> >> addressed. If you believe this e-mail was sent to you in >> >> error and the e-mail >> >> contains patient information, please contact the Partners >> >> Compliance HelpLine at >> >> http://www.partners.org/complianceline . If the e-mail was >> >> sent to you in error >> >> but does not contain patient information, please contact the >> >> sender and properly >> >> dispose of the e-mail. >> >> >> >> -- >> >> Fernanda Hansen P. de Moraes >> >> Física Médica | Instituto D'Or de Pesquisa e Ensino | Rede D'Or >> >> São Luiz >> >> >> >> >> >> _______________________________________________ >> >> Freesurfer mailing list >> >> Freesurfer@nmr.mgh.harvard.edu >> >> <mailto:Freesurfer@nmr.mgh.harvard.edu> >> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> > >> > -- >> > Fernanda Hansen P. de Moraes >> > Física Médica | Instituto D'Or de Pesquisa e Ensino | Rede D'Or São Luiz >> >> -- > Fernanda Hansen P. de Moraes > Física Médica | Instituto D'Or de Pesquisa e Ensino | Rede D'Or São Luiz > > > -- Fernanda Hansen P. de Moraes Física Médica | Instituto D'Or de Pesquisa e Ensino | Rede D'Or São Luiz
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