Hi Maria, 

you can include all time points per subject in the longitudinal processing. For 
the statistics I would add a time-varying co-variate with the head coil type. 
Best, Martin

> On 13. Mar 2018, at 11:45, Maria Paternina Die <mpatern...@hggm.es> wrote:
> 
> Dear all,
> 
> We want to run the longitudinal FS processing pipeline for our study, which 
> has 4 time points. The 1st one was acquired with a radiofrequency head coil 
> of 8 channels. Then, due to unexpected problems, some subjects at the 2nd 
> time point were acquired with a different head coil of 16 channels. 
> At time points 3 and 4, all subjects were scanned with the first head coil 
> and only the subjects with different head coil at time point two were 
> acquired twice (using both head coils). My question is: is there a way to do 
> the longitudinal processing pipeline including more than an image per time 
> point (one with the 16ch and the other with the 8ch)? If so, which will be 
> the best procedure to follow?
> 
> Thanks in advance for your time,
> 
> Maria
> 
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