Hi Gina tkmedit has been deprecated for many years. Can you try using freeview instead?
cheers Bruce On Tue, 27 Mar 2018, gj wrote: > Hi, > > When I launch tkmedit, I only get the "Display" window with no "Tools" > window so I don't have any menus (I wanted to overlay a label file -- > not sure how I do that from the command line either). > > I don't see any errors in the terminal from where I launch tkmedit > > ------------------------------------------------------------- > $ tkmedit -f $FSLDIR/data/standard/MNI152_T1_2mm.nii.gz \ > -overlay $wd/MPM_rh.FG1.label.nii \ > -overlay-reg $FREESURFER_HOME/average/mni152.register.dat \ > -fthresh .5 -fmid 1 & > [3] 21284 > $ tkmedit: Trying to open TOOLBOXES/vcAtlas/NII/MPM_rh.FG1.label.dat > Reading /common/apps/freesurfer-6.0.0_x86_64/tktools/tkm_common.tcl > Reading /common/apps/freesurfer-6.0.0_x86_64/tktools/tkm_wrappers.tcl > Reading /common/apps/freesurfer-6.0.0_x86_64/lib/tcl/fsgdfPlot.tcl > Reading /common/apps/freesurfer-6.0.0_x86_64/tktools/tkUtils.tcl > ------------------------------------------------------------- > > Thanks in advance for any help! > Gina > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
