why do you need to go into the volume at all? If the labels exist on the
surface in the format of an annotation file, then you can use annot2std
On 3/16/18 3:08 PM, Yagmur Ozdemir 19 wrote:
Hello FreeSurfer experts,
I am trying to create a group average of labels defined on inflated
surface, and so far I tried mri_label2vol which succesfully got the
labels to volume space and binarized for averaging, however when I
sample this back to the inflated surface of fsaverage, using
mri_label2label, the location is completely wrong and the label looks
very distorted. I tried to use mri_vol2surf and mri_vol2roi instead
for the latter portion and both did not work. Do you have any
suggestions? I think mri_vol2surf can work if I have a register.dat
file for fsaverage vol->surf but so far I didn't come across one and
couldn't see how to create one.
Also I think if I can create overlays out of the labels, then I can do
mri_concat to average them out and with mri_cor2label get them out as
labels again. However I did not come across a script that creates
overlays out of labels.
Thank you for all the thoughts and suggestions
Best
Idil
_______________________________________________
Freesurfer mailing list
[email protected]
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
[email protected]
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
