Both average hemispheres look very bad, they don't even look like a brain.
The two monkey surfaces look reasonable, except for some topological defect
that I think could be fixed with some manual editing. Is there anything I
could try?

Thanks a lot
Francesca

2018-03-14 23:41 GMT+01:00 Douglas N. Greve <dgr...@mgh.harvard.edu>:

> I don't know what is going on there except that the average surfaces are
> probably wrong in some way. It looks like it made it all the way through
> except for that step, so all of the output should be there. How does it
> look?
>
>
> On 03/13/2018 05:27 PM, Francesca Strappini wrote:
> > Dear Experts,
> >
> > I'm trying to average two monkey brains. I run this command line:
> >
> >  make_average_subject --subjects MonkeyCelia MonkeyCassis --out
> AVGmonkeys
> >
> > but it ended with errors.
> >
> > I run the recon-all for both monkyes with the option -notal-check
> > because I had problems with the Talairach registration. I don't know
> > if this could be the cause.
> >
> > Thanks a lot
> > Francesca
> >
> > Tue Mar 13 20:04:06 CET 2018
> > /usr/local/freesurfer/subjects/AVGmonkeys
> > /usr/local/freesurfer/bin/recon-all
> > -s AVGmonkeys -cortribbon -aparc2aseg
> > subjid AVGmonkeys
> > setenv SUBJECTS_DIR /usr/local/freesurfer/subjects
> > FREESURFER_HOME /usr/local/freesurfer
> > Actual FREESURFER_HOME /usr/local/freesurfer
> > build-stamp.txt: freesurfer-Linux-centos6_x86_
> 64-stable-pub-v6.0.0-2beb96c
> > Linux shalimpc 4.4.0-116-generic #140-Ubuntu SMP Mon Feb 12 21:23:04
> > UTC 2018 x86_64 x86_64 x86_64 GNU/Linux
> > cputime      unlimited
> > filesize     unlimited
> > datasize     unlimited
> > stacksize    8192 kbytes
> > coredumpsize 0 kbytes
> > memoryuse    unlimited
> > vmemoryuse   unlimited
> > descriptors  1024
> > memorylocked 64 kbytes
> > maxproc      63682
> > maxlocks     unlimited
> > maxsignal    63682
> > maxmessage   819200
> > maxnice      0
> > maxrtprio    0
> > maxrttime    unlimited
> >
> >               total        used        free      shared buff/cache
> > available
> > Mem:       16350220     4943572     7520800      278988 3885848
> > 10739864
> > Swap:      19528700           0    19528700
> >
> > ########################################
> > program versions used
> > $Id: recon-all,v 1.580.2.16 2017/01/18 14:11:24 zkaufman Exp $
> > $Id: mri_motion_correct.fsl,v 1.15 2016/02/16 17:17:20 zkaufman Exp $
> > mri_convert.bin -all-info
> > ProgramName: mri_convert.bin  ProgramArguments: -all-info
> > ProgramVersion: $Name: stable6 $  TimeStamp: 2018/03/13-19:04:06-GMT
> > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id: mri_convert.c,v 1.226
> > 2016/02/26 16:15:24 mreuter Exp $  User: francesca  Machine: shalimpc
> > Platform: Linux  PlatformVersion: 4.4.0-116-generic CompilerName: GCC
> > CompilerVersion: 40400
> > FLIRT version 5.5
> > $Id: talairach_avi,v 1.13 2015/12/23 04:25:17 greve Exp $
> > mri_convert.bin --version
> > stable6
> > ProgramName: tkregister2_cmdl  ProgramArguments: --all-info
> > ProgramVersion: $Name: stable6 $  TimeStamp: 2018/03/13-19:04:06-GMT
> > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id: tkregister2.c,v
> > 1.132.2.1 2016/08/02 21:17:29 greve Exp $  User: francesca  Machine:
> > shalimpc Platform: Linux  PlatformVersion: 4.4.0-116-generic
> > CompilerName: GCC  CompilerVersion: 40400
> > Program nu_correct, built from:
> > Package MNI N3, version 1.12.0, compiled by nicks@terrier
> > (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34
> > ProgramName: mri_make_uchar  ProgramArguments: -all-info
> > ProgramVersion: $Name: stable6 $  TimeStamp: 2018/03/13-19:04:06-GMT
> > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id: mri_make_uchar.c,v 1.4
> > 2011/03/02 00:04:14 nicks Exp $  User: francesca  Machine: shalimpc
> > Platform: Linux  PlatformVersion: 4.4.0-116-generic CompilerName: GCC
> > CompilerVersion: 40400
> > ProgramName: mri_normalize  ProgramArguments: -all-info
> > ProgramVersion: $Name:  $  TimeStamp: 2018/03/13-19:04:06-GMT
> > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id: mri_normalize.c,v
> > 1.88.2.3 2016/12/27 16:47:13 zkaufman Exp $  User: francesca  Machine:
> > shalimpc Platform: Linux  PlatformVersion: 4.4.0-116-generic
> > CompilerName: GCC  CompilerVersion: 40400
> > ProgramName: mri_watershed  ProgramArguments: -all-info
> > ProgramVersion: $Name: stable6 $  TimeStamp: 2018/03/13-19:04:06-GMT
> > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id: mri_watershed.cpp,v
> > 1.103 2016/06/17 18:00:49 zkaufman Exp $  User: francesca  Machine:
> > shalimpc Platform: Linux  PlatformVersion: 4.4.0-116-generic
> > CompilerName: GCC  CompilerVersion: 40400
> > ProgramName: mri_gcut  ProgramArguments: -all-info ProgramVersion:
> > $Name: stable6 $  TimeStamp: 2018/03/13-19:04:06-GMT  BuildTimeStamp:
> > Jan 18 2017 16:38:58  CVS: $Id: mri_gcut.cpp,v 1.14 2011/03/02
> > 00:04:16 nicks Exp $  User: francesca  Machine: shalimpc  Platform:
> > Linux  PlatformVersion: 4.4.0-116-generic  CompilerName: GCC
> > CompilerVersion: 40400
> > ProgramName: mri_segment  ProgramArguments: -all-info ProgramVersion:
> > $Name:  $  TimeStamp: 2018/03/13-19:04:06-GMT  BuildTimeStamp: Jan 18
> > 2017 16:38:58  CVS: $Id: mri_segment.c,v 1.43.2.1 2016/10/27 22:24:52
> > zkaufman Exp $  User: francesca  Machine: shalimpc Platform: Linux
> > PlatformVersion: 4.4.0-116-generic CompilerName: GCC  CompilerVersion:
> > 40400
> > ProgramName: mri_label2label.bin  ProgramArguments: -all-info
> > ProgramVersion: $Name:  $  TimeStamp: 2018/03/13-19:04:06-GMT
> > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id: mri_label2label.c,v
> > 1.48.2.2 2016/12/12 14:15:26 zkaufman Exp $  User: francesca  Machine:
> > shalimpc Platform: Linux  PlatformVersion: 4.4.0-116-generic
> > CompilerName: GCC  CompilerVersion: 40400
> > ProgramName: mri_em_register  ProgramArguments: -all-info
> > ProgramVersion: $Name:  $  TimeStamp: 2018/03/13-19:04:06-GMT
> > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id: mri_em_register.c,v
> > 1.105.2.1 2016/10/27 22:25:10 zkaufman Exp $  User: francesca
> > Machine: shalimpc Platform: Linux  PlatformVersion: 4.4.0-116-generic
> > CompilerName: GCC  CompilerVersion: 40400
> > ProgramName: mri_ca_normalize  ProgramArguments: -all-info
> > ProgramVersion: $Name:  $  TimeStamp: 2018/03/13-19:04:06-GMT
> > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id: mri_ca_normalize.c,v
> > 1.67.2.2 2016/10/27 22:25:09 zkaufman Exp $  User: francesca  Machine:
> > shalimpc Platform: Linux  PlatformVersion: 4.4.0-116-generic
> > CompilerName: GCC  CompilerVersion: 40400
> > ProgramName: mri_ca_register  ProgramArguments: -all-info
> > ProgramVersion: $Name:  $  TimeStamp: 2018/03/13-19:04:06-GMT
> > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id: mri_ca_register.c,v
> > 1.96.2.3 2016/10/27 22:25:10 zkaufman Exp $  User: francesca  Machine:
> > shalimpc Platform: Linux  PlatformVersion: 4.4.0-116-generic
> > CompilerName: GCC  CompilerVersion: 40400
> > ProgramName: mri_ca_label  ProgramArguments: -all-info ProgramVersion:
> > $Name:  $  TimeStamp: 2018/03/13-19:04:06-GMT  BuildTimeStamp: Jan 18
> > 2017 16:38:58  CVS: $Id: mri_ca_label.c,v 1.113.2.2 2016/10/27
> > 22:25:10 zkaufman Exp $  User: francesca  Machine: shalimpc Platform:
> > Linux  PlatformVersion: 4.4.0-116-generic CompilerName: GCC
> > CompilerVersion: 40400
> > ProgramName: mri_pretess  ProgramArguments: -all-info ProgramVersion:
> > $Name: stable6 $  TimeStamp: 2018/03/13-19:04:06-GMT  BuildTimeStamp:
> > Jan 18 2017 16:38:58  CVS: $Id: mri_pretess.c,v 1.22 2013/08/30
> > 18:12:25 mreuter Exp $  User: francesca  Machine: shalimpc  Platform:
> > Linux  PlatformVersion: 4.4.0-116-generic  CompilerName: GCC
> > CompilerVersion: 40400
> > ProgramName: mri_fill  ProgramArguments: -all-info ProgramVersion:
> > $Name: stable6 $  TimeStamp: 2018/03/13-19:04:06-GMT  BuildTimeStamp:
> > Jan 18 2017 16:38:58  CVS: $Id: mri_fill.c,v 1.119 2011/10/25 14:09:58
> > fischl Exp $  User: francesca  Machine: shalimpc  Platform: Linux
> > PlatformVersion: 4.4.0-116-generic  CompilerName: GCC
> > CompilerVersion: 40400
> > ProgramName: mri_tessellate  ProgramArguments: -all-info
> > ProgramVersion: $Name:  $  TimeStamp: 2018/03/13-19:04:06-GMT
> > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id: mri_tessellate.c,v
> > 1.38.2.1 2016/07/26 18:46:38 zkaufman Exp $  User: francesca  Machine:
> > shalimpc Platform: Linux  PlatformVersion: 4.4.0-116-generic
> > CompilerName: GCC  CompilerVersion: 40400
> > ProgramName: mri_concatenate_lta.bin  ProgramArguments: -all-info
> > ProgramVersion: $Name: stable6 $  TimeStamp: 2018/03/13-19:04:06-GMT
> > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id:
> > mri_concatenate_lta.c,v 1.16 2015/11/21 00:06:20 greve Exp $  User:
> > francesca  Machine: shalimpc Platform: Linux  PlatformVersion:
> > 4.4.0-116-generic CompilerName: GCC  CompilerVersion: 40400
> > ProgramName: mri_normalize_tp2  ProgramArguments: -all-info
> > ProgramVersion: $Name: stable6 $  TimeStamp: 2018/03/13-19:04:06-GMT
> > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id: mri_normalize_tp2.c,v
> > 1.8 2011/03/02 00:04:23 nicks Exp $  User: francesca  Machine:
> > shalimpc Platform: Linux  PlatformVersion: 4.4.0-116-generic
> > CompilerName: GCC  CompilerVersion: 40400
> > ProgramName: mris_smooth  ProgramArguments: -all-info ProgramVersion:
> > $Name: stable6 $  TimeStamp: 2018/03/13-19:04:06-GMT  BuildTimeStamp:
> > Jan 18 2017 16:38:58  CVS: $Id: mris_smooth.c,v 1.30 2014/01/21
> > 18:48:21 fischl Exp $  User: francesca  Machine: shalimpc  Platform:
> > Linux  PlatformVersion: 4.4.0-116-generic  CompilerName: GCC
> > CompilerVersion: 40400
> > ProgramName: mris_inflate  ProgramArguments: -all-info ProgramVersion:
> > $Name: stable6 $  TimeStamp: 2018/03/13-19:04:06-GMT  BuildTimeStamp:
> > Jan 18 2017 16:38:58  CVS: $Id: mris_inflate.c,v 1.45 2016/01/20
> > 23:42:15 greve Exp $  User: francesca  Machine: shalimpc Platform:
> > Linux  PlatformVersion: 4.4.0-116-generic CompilerName: GCC
> > CompilerVersion: 40400
> > ProgramName: mris_curvature  ProgramArguments: -all-info
> > ProgramVersion: $Name: stable6 $  TimeStamp: 2018/03/13-19:04:06-GMT
> > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id: mris_curvature.c,v
> > 1.31 2011/03/02 00:04:30 nicks Exp $  User: francesca  Machine:
> > shalimpc Platform: Linux  PlatformVersion: 4.4.0-116-generic
> > CompilerName: GCC  CompilerVersion: 40400
> > ProgramName: mris_sphere  ProgramArguments: -all-info ProgramVersion:
> > $Name: stable6 $  TimeStamp: 2018/03/13-19:04:06-GMT  BuildTimeStamp:
> > Jan 18 2017 16:38:58  CVS: $Id: mris_sphere.c,v 1.61 2016/01/20
> > 23:42:15 greve Exp $  User: francesca  Machine: shalimpc  Platform:
> > Linux  PlatformVersion: 4.4.0-116-generic  CompilerName: GCC
> > CompilerVersion: 40400
> > ProgramName: mris_fix_topology  ProgramArguments: -all-info
> > ProgramVersion: $Name:  $  TimeStamp: 2018/03/13-19:04:06-GMT
> > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id: mris_fix_topology.c,v
> > 1.50.2.1 2016/10/27 22:25:58 zkaufman Exp $  User: francesca Machine:
> > shalimpc  Platform: Linux  PlatformVersion: 4.4.0-116-generic
> > CompilerName: GCC  CompilerVersion: 40400
> > ProgramName: mris_topo_fixer  ProgramArguments: -all-info
> > ProgramVersion: $Name: stable6 $  TimeStamp: 2018/03/13-19:04:06-GMT
> > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id: mris_topo_fixer.cpp,v
> > 1.29 2011/03/02 00:04:34 nicks Exp $  User: francesca  Machine:
> > shalimpc Platform: Linux  PlatformVersion: 4.4.0-116-generic
> > CompilerName: GCC  CompilerVersion: 40400
> > ProgramName: mris_ca_label  ProgramArguments: -all-info
> > ProgramVersion: $Name: stable6 $  TimeStamp: 2018/03/13-19:04:06-GMT
> > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id: mris_ca_label.c,v 1.37
> > 2014/02/04 17:46:42 fischl Exp $  User: francesca  Machine: shalimpc
> > Platform: Linux  PlatformVersion: 4.4.0-116-generic CompilerName: GCC
> > CompilerVersion: 40400
> > ProgramName: mris_euler_number  ProgramArguments: -all-info
> > ProgramVersion: $Name: stable6 $  TimeStamp: 2018/03/13-19:04:06-GMT
> > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id: mris_euler_number.c,v
> > 1.10 2013/01/14 22:39:14 greve Exp $  User: francesca  Machine:
> > shalimpc Platform: Linux  PlatformVersion: 4.4.0-116-generic
> > CompilerName: GCC  CompilerVersion: 40400
> > ProgramName: mris_make_surfaces  ProgramArguments: -all-info
> > ProgramVersion: $Name:  $  TimeStamp: 2018/03/13-19:04:06-GMT
> > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id: mris_make_surfaces.c,v
> > 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $  User: francesca Machine:
> > shalimpc  Platform: Linux  PlatformVersion: 4.4.0-116-generic
> > CompilerName: GCC  CompilerVersion: 40400
> > ProgramName: mris_register  ProgramArguments: -all-info
> > ProgramVersion: $Name: stable6 $  TimeStamp: 2018/03/13-19:04:06-GMT
> > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id: mris_register.c,v 1.63
> > 2016/01/20 23:43:04 greve Exp $  User: francesca  Machine: shalimpc
> > Platform: Linux  PlatformVersion: 4.4.0-116-generic CompilerName: GCC
> > CompilerVersion: 40400
> > ProgramName: mris_volmask  ProgramArguments: --all-info
> > ProgramVersion: $Name:  $  TimeStamp: 2018/03/13-19:04:06-GMT
> > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id: mris_volmask.cpp,v
> > 1.26.2.2 2016/11/18 20:05:18 zkaufman Exp $  User: francesca  Machine:
> > shalimpc Platform: Linux  PlatformVersion: 4.4.0-116-generic
> > CompilerName: GCC  CompilerVersion: 40400
> > ProgramName: mris_anatomical_stats  ProgramArguments: -all-info
> > ProgramVersion: $Name: stable6 $  TimeStamp: 2018/03/13-19:04:06-GMT
> > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id:
> > mris_anatomical_stats.c,v 1.79 2016/03/14 15:15:34 greve Exp $  User:
> > francesca  Machine: shalimpc  Platform: Linux  PlatformVersion:
> > 4.4.0-116-generic  CompilerName: GCC  CompilerVersion: 40400
> > ProgramName: mrisp_paint  ProgramArguments: -all-info ProgramVersion:
> > $Name: stable6 $  TimeStamp: 2018/03/13-19:04:06-GMT  BuildTimeStamp:
> > Jan 18 2017 16:38:58  CVS: $Id: mrisp_paint.c,v 1.12 2016/03/22
> > 14:47:57 fischl Exp $  User: francesca  Machine: shalimpc  Platform:
> > Linux  PlatformVersion: 4.4.0-116-generic  CompilerName: GCC
> > CompilerVersion: 40400
> > ProgramName: mris_curvature_stats  ProgramArguments: -all-info
> > ProgramVersion: $Name: stable6 $  TimeStamp: 2018/03/13-19:04:06-GMT
> > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id:
> > mris_curvature_stats.c,v 1.65 2015/06/04 20:50:51 nicks Exp $  User:
> > francesca  Machine: shalimpc Platform: Linux  PlatformVersion:
> > 4.4.0-116-generic CompilerName: GCC  CompilerVersion: 40400
> > ProgramName: mris_calc  ProgramArguments: -all-info ProgramVersion:
> > $Name: stable6 $  TimeStamp: 2018/03/13-19:04:06-GMT  BuildTimeStamp:
> > Jan 18 2017 16:38:58  CVS: $Id: mris_calc.c,v 1.54.2.1 2016/09/27
> > 18:51:28 greve Exp $  User: francesca  Machine: shalimpc Platform:
> > Linux  PlatformVersion: 4.4.0-116-generic CompilerName: GCC
> > CompilerVersion: 40400
> > $Id: mri_robust_register.cpp,v 1.77 2016/01/20 23:36:17 greve Exp $
> >
> > ProgramName: mri_robust_register.bin  ProgramArguments: -all-info
> > ProgramVersion: $Name: stable6 $  TimeStamp: 2018/03/13-19:04:06-GMT
> > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id:
> > mri_robust_register.cpp,v 1.77 2016/01/20 23:36:17 greve Exp $  User:
> > francesca  Machine: shalimpc  Platform: Linux  PlatformVersion:
> > 4.4.0-116-generic  CompilerName: GCC  CompilerVersion: 40400
> > $Id: mri_robust_template.cpp,v 1.54 2016/05/05 21:17:08 mreuter Exp $
> >
> > ProgramName: mri_robust_template  ProgramArguments: -all-info
> > ProgramVersion: $Name: stable6 $  TimeStamp: 2018/03/13-19:04:06-GMT
> > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id:
> > mri_robust_template.cpp,v 1.54 2016/05/05 21:17:08 mreuter Exp $
> > User: francesca  Machine: shalimpc  Platform: Linux  PlatformVersion:
> > 4.4.0-116-generic  CompilerName: GCC  CompilerVersion: 40400
> > ProgramName: mri_and  ProgramArguments: -all-info ProgramVersion:
> > $Name: stable6 $  TimeStamp: 2018/03/13-19:04:06-GMT  BuildTimeStamp:
> > Jan 18 2017 16:38:58  CVS: $Id: mri_and.c,v 1.4 2011/03/02 00:04:13
> > nicks Exp $  User: francesca  Machine: shalimpc  Platform: Linux
> > PlatformVersion: 4.4.0-116-generic  CompilerName: GCC
> > CompilerVersion: 40400
> > ProgramName: mri_or  ProgramArguments: -all-info ProgramVersion:
> > $Name: stable6 $  TimeStamp: 2018/03/13-19:04:06-GMT  BuildTimeStamp:
> > Jan 18 2017 16:38:58  CVS: $Id: mri_or.c,v 1.5 2013/03/20 15:03:29
> > lzollei Exp $  User: francesca  Machine: shalimpc  Platform: Linux
> > PlatformVersion: 4.4.0-116-generic  CompilerName: GCC
> > CompilerVersion: 40400
> > ProgramName: mri_fuse_segmentations  ProgramArguments: -all-info
> > ProgramVersion: $Name: stable6 $  TimeStamp: 2018/03/13-19:04:06-GMT
> > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id:
> > mri_fuse_segmentations.c,v 1.8 2011/03/02 00:04:15 nicks Exp $  User:
> > francesca  Machine: shalimpc  Platform: Linux  PlatformVersion:
> > 4.4.0-116-generic  CompilerName: GCC  CompilerVersion: 40400
> > ProgramName: mri_segstats  ProgramArguments: -all-info ProgramVersion:
> > $Name: stable6 $  TimeStamp: 2018/03/13-19:04:06-GMT  BuildTimeStamp:
> > Jan 18 2017 16:38:58  CVS: $Id: mri_segstats.c,v 1.121 2016/05/31
> > 17:27:11 greve Exp $  User: francesca  Machine: shalimpc Platform:
> > Linux  PlatformVersion: 4.4.0-116-generic CompilerName: GCC
> > CompilerVersion: 40400
> > ProgramName: mri_relabel_hypointensities  ProgramArguments: -all-info
> > ProgramVersion: $Name: stable6 $  TimeStamp: 2018/03/13-19:04:06-GMT
> > BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id:
> > mri_relabel_hypointensities.c,v 1.13 2015/05/15 18:44:10 nicks Exp $
> > User: francesca  Machine: shalimpc  Platform: Linux  PlatformVersion:
> > 4.4.0-116-generic  CompilerName: GCC  CompilerVersion: 40400
> > #######################################
> > GCADIR /usr/local/freesurfer/average
> > GCA RB_all_2016-05-10.vc700.gca
> > GCASkull RB_all_withskull_2016-05-10.vc700.gca
> > AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif
> > GCSDIR /usr/local/freesurfer/average
> > GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs
> > #######################################
> > #--------------------------------------------
> > #@# Cortical ribbon mask Tue Mar 13 20:04:06 CET 2018
> > /usr/local/freesurfer/subjects/AVGmonkeys/mri
> >
> >  mris_volmask --aseg_name aseg.presurf --label_left_white 2
> > --label_left_ribbon 3 --label_right_white 41 --label_right_ribbon 42
> > --save_ribbon AVGmonkeys
> >
> > SUBJECTS_DIR is /usr/local/freesurfer/subjects
> > loading input data...
> > computing distance to left white surface
> > computing distance to left pial surface
> > computing distance to right white surface
> > computing distance to right pial surface
> >  hemi masks overlap voxels = 34535
> > writing volume /usr/local/freesurfer/subjects/AVGmonkeys/mri/ribbon.mgz
> > ERROR: ribbon has non-zero value at location 0,0,0
> > Linux shalimpc 4.4.0-116-generic #140-Ubuntu SMP Mon Feb 12 21:23:04
> > UTC 2018 x86_64 x86_64 x86_64 GNU/Linux
> >
> > recon-all -s AVGmonkeys exited with ERRORS at Tue Mar 13 20:26:58 CET
> 2018
> >
> > To report a problem, see
> > http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
> >
> >
> > --
> > Francesca Strappini, Ph.D.
> > Neurobiology Department
> > Weizmann Institute of Science
> > 234 Herzl Street, Rehovot 7610001 Israel
> > Tel.: +972 58 444 2584
> > E-mail: francesca.strapp...@weizmann.ac.il
> > <mailto:francesca.strapp...@weizmann.ac.il>
> >
> >
> > _______________________________________________
> > Freesurfer mailing list
> > Freesurfer@nmr.mgh.harvard.edu
> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
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> HelpLine at
> http://www.partners.org/complianceline . If the e-mail was sent to you in
> error
> but does not contain patient information, please contact the sender and
> properly
> dispose of the e-mail.
>



-- 
Francesca Strappini, Ph.D.
Neurobiology Department
Weizmann Institute of Science
234 Herzl Street, Rehovot 7610001 Israel
Tel.: +972 58 444 2584
E-mail: francesca.strapp...@weizmann.ac.il
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