Hello,
I am running recon-all for the first time, and I am wondering when it is proper to use the -i option. My current recon-all command includes the -i option: recon-all -i T1.nii.gz -s 1020 -all, where T1.nii.gz is a nifti file of all 160 anatomical dicoms. I've seen some commands like this however: recon-all -s subjid -all?. My question is, is it safer to specify the input, and if I choose not to, do I need to create an mri/orig/001.mgz file from mri_convert? Thank you for the help, Dan
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