You can run preproc-sess like this (don't include -mni305 or -surf) preproc-sess -per-session -fsd bold -fwhm 5 -s session
Then mkanalysis: mkanalysis-sess -a mains -native -fwhm 5 -fsd bold ... This will analyze things in the native fmri space. You can then convert the results to the anatomical space with mri_vol2vol --reg register.dof6.lta --mov sig.nii.gz --fstarg --o sig.anat.nii.gz On 2/7/18 11:32 AM, Tuominen, Lauri Johannes wrote: > Dear Freesurfers! > I would like have my fMRI runs in the native T1 volume space and do the first > level analyses there. I can only find -self flag for surface based analyses > in preproc-sess. What would be there recommended way to do the analyses in > the T1 volume space? This is 7T data and I’d like to use the individual > segmentations as ROIs. > > Thank you so much! > Lauri Tuominen > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
