Yes, that is the correct command line
On 2/9/18 9:16 AM, Avideh Gharehgazlou wrote:
Hi Freesurfer experts,
I found the answer to my previous question on FreeSurfer Wiki
regarding pre-smoothing command line for LGI ( I am interested in
looking at between-group differences in vertwex-wise LGI values).
I am now aware that the following command line must be used:
recon-all -s <subjid> -qcache -measure pial_lgi
However, if I also want to look at surface area differences between
groups later on, is using the above pre-smoothing command line
correct? OR do I have to use the following command line considering
that I Am not only looking at LGI values : recon-all -s <subjid> -qcache
Would really appreciate your advice,
Thanks,
Avi
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