I have run: 1)
mris_preproc --fsgd GROUP1.fsgd --target fsaverage --hemi rh --meas thickness --out rh.GROUP1.thickness.00.mgh mri_surf2surf --hemi rh --s fsaverage --sval rh.GROUP1.thickness.00.mgh --fwhm 10 --cortex --tval rh.GROUP1.thickness.10B.mgh 2) mri_glmfit --y ces.nii.gz --wls cesvar.nii.gz --surface fsaverage rh --glmdir Age.wls --nii.gz --fsgd g1v1_Age.fsgd --C intercept.mtx --C slope.mtx --pvr rh.GROUP1.thickness.10B.mgh The command line is correct? My concern is on the fsgd file. I have GroupDescriptorFile 1 Title All Class Main Variables thickness Input ADNI0XX_GROUP1 Main ???? Input ADNI0XY_GROUP1 Main ???? Input ADNI0YX.GROUP1 Main ???? ... What I should add after Main if I would like to assess the vertex by vertex correlation between FC (between seed and target vertex) and thickness (in the target vertex)? Should I add the path where is contained rh.thickness.mgh of each subject? Please give me an help because I did not find these information using --help or mail list. Thanks Stefano Il 3 febbraio 2018 alle 19.55 Douglas Greve <gr...@nmr.mgh.harvard.edu> ha scritto: Yes, use the --pvr option to mri_glmfit (per-voxel regressor). Search through the mail archives for an example on how to use it On 2/3/18 12:10 PM, std...@virgilio.it mailto:std...@virgilio.it wrote: > > Hi list, > > Is there a way to obtain a map that report the "vertex by vertex" > correlation between the FC (obtained by FS-FAST) and cortical thickness? > > Thanks > > > Stefano > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. >
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