Hi Bruce,
This is the command and output on a CentOS 7 machine:
[dc155@pinto DANI]$ mri_convert 3062.nii.gz -rl MNI152_T1_2mm_brain.nii.gz
3062_MNI.nii.gz
mri_convert 3062.nii.gz -rl MNI152_T1_2mm_brain.nii.gz 3062_MNI.nii.gz
$Id: mri_convert.c,v 1.146.2.1 2007/11/30 23:18:44 greve Exp $
reading from 3062.nii.gz...
Segmentation fault (core dumped)
This is the command and output on a CentOS 6 machine:
[dc155@door DANI]$ mri_convert 3062.nii.gz -rl MNI152_T1_2mm_brain.nii.gz
3062_MNI.nii.gz
mri_convert 3062.nii.gz -rl MNI152_T1_2mm_brain.nii.gz 3062_MNI.nii.gz
$Id: mri_convert.c,v 1.146.2.1 2007/11/30 23:18:44 greve Exp $
reading from 3062.nii.gz...
TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 1, 0)
k_ras = (0, 0, 1)
reading template info from volume MNI152_T1_2mm_brain.nii.gz...
Reslicing using trilinear interpolation
writing to 3062_MNI.nii.gz...
Thank you,
Danielle
On 1/30/18, 5:44 PM, "freesurfer-boun...@nmr.mgh.harvard.edu on behalf of
Bruce Fischl" <freesurfer-boun...@nmr.mgh.harvard.edu on behalf of
fis...@nmr.mgh.harvard.edu> wrote:
Hi Danielle
can you post the full command line and screen output?
cheers
Bruce
On Tue, 30 Jan 2018,
Cooke,Danielle ( BIDMC - Neurology ) wrote:
>
> Hello,
>
>
>
> I recently ran into issues using mri_convert on a CentOS 7 platform while
having the same command work fine on CentOS 6. The
> error that results is:
>
> Segmentation fault (core dumped)
>
>
>
> I've tried on multiple machines with both operating systems to confirm
the issue. I was wondering if you might have any
> insights or suggestions on how to fix this.
>
>
>
> Thank you!
>
> Danielle
>
>
>
>
>
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