Hi Hannah, This seems like a more general problem with your PATH, but I’m sure Andrew (CCed) has a better idea of what might be going on. Cheers, /Eugenio
-- Juan Eugenio Iglesias ERC Senior Research Fellow Translational Imaging Group University College London http://www.jeiglesias.com http://cmictig.cs.ucl.ac.uk/ On 20/01/2018, 00:23, "freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Hannah's USC Email" <freesurfer-boun...@nmr.mgh.harvard.edu on behalf of shan...@usc.edu> wrote: Hi Freesurfer experts, I tried to do hippocampus subfield analysis but failed. I got this error message: #@# Hippocampal Subfields processing (T1 only) left Fri Jan 19 15:27:36 PST 2018 dirname: Command not found. pwd: Command not found. pwd: Command not found. /run_segmentSubjectT1_autoEstimateAlveusML.sh: Command not found. #-------------------------------------------- #@# Hippocampal Subfields processing (T1 only) right Fri Jan 19 15:27:36 PST 2018 dirname: Command not found. pwd: Command not found. pwd: Command not found. /run_segmentSubjectT1_autoEstimateAlveusML.sh: Command not found. Your help would be greatly appreciated. Thanks! _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
