Thank you very much. Your last email gave me a lot to work with. On Mon, Jan 15, 2018 at 9:18 AM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote:
> Hi Aaron > > we compute the warp and save it in the mri/transforms/talairach.m3z, but > don't apply it (so don't require an extra resampling). I know we have some > tools around to convert to ANTS format, but I'm not sure about fnirt. I'll > cc MJ who may know (hi MJ!) > > cheers > Bruce > > > > On Mon, 15 Jan 2018, Aaron Tanenbaum wrote: > > Is the warp saved anywhere and where can I find it? Also is the warp >> compatible with FNIRT in any >> way. I am interested in combining warps together to reduce the number of >> re-sampling steps. >> Thank you so much in advanced >> >> On Mon, Jan 15, 2018 at 8:53 AM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> >> wrote: >> in the last stage there is a nonlinear atlas alignment that is >> specific to >> each timepoint. We are working on building a nonlinear base, but it >> is not >> distributed yet. >> >> cheers >> Bruce >> On Sun, 14 Jan 2018, Aaron >> Tanenbaum wrote: >> >> > >> > I am interested in knowing what type of alignment goes into the >> last stage of the >> longitudinal >> > pipeline. Are each longitudinal time point non-linearly aligned >> to the base image? If >> so can I find >> > the warp? >> > >> > >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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