Hi Aaron
we compute the warp and save it in the mri/transforms/talairach.m3z, but
don't apply it (so don't require an extra resampling). I know we have some
tools around to convert to ANTS format, but I'm not sure about fnirt. I'll
cc MJ who may know (hi MJ!)
cheers
Bruce
On Mon, 15 Jan 2018,
Aaron Tanenbaum wrote:
Is the warp saved anywhere and where can I find it? Also is the warp compatible
with FNIRT in any
way. I am interested in combining warps together to reduce the number of
re-sampling steps.
Thank you so much in advanced
On Mon, Jan 15, 2018 at 8:53 AM, Bruce Fischl <fis...@nmr.mgh.harvard.edu>
wrote:
in the last stage there is a nonlinear atlas alignment that is specific to
each timepoint. We are working on building a nonlinear base, but it is not
distributed yet.
cheers
Bruce
On Sun, 14 Jan 2018, Aaron
Tanenbaum wrote:
>
> I am interested in knowing what type of alignment goes into the last
stage of the
longitudinal
> pipeline. Are each longitudinal time point non-linearly aligned to the
base image? If
so can I find
> the warp?
>
>
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