Dear Zheng, You need to download the whole dev version, not just the script ;-) Cheers, /E
-- Juan Eugenio Iglesias ERC Senior Research Fellow Translational Imaging Group University College London http://www.jeiglesias.com http://cmictig.cs.ucl.ac.uk/ From: <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of 郑凤莲 <13181786...@163.com> Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> Date: Thursday, 11 January 2018 at 11:20 To: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu> Subject: [Freesurfer] Amydala segmentation Hi FS experts, I ran "segmentHA_T1.sh 0010006 $SUBJECTS_DIR" for amydala segmentations. But there is only hippocampal subfields, no amydala segmentation .txt file in mri file. I ran ''recon-all'' in FS 6.0, and copy segmentHA_T1.sh and checkMCR to FREESURFER_HOME. Why there is no files of amydala? [cid:image001.png@01D38ADD.534E4400] [cid:image002.png@01D38ADD.534E4400] I am looking forward to your reply. Thank you very much. Sincerely, Zheng
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