Thanks. Douglas But, I've never performed each step of FS. Could you explain in detail how to check the registration and re-run with -no-talcheck?
2018-01-01 6:53 GMT+09:00 Douglas Greve <gr...@nmr.mgh.harvard.edu>: > Probably not because of the voxel size. First, check the registration. If > it looks ok, then you can re-run with -no-talcheck. If it does, not look > good, then fix it and rerun. > > On 12/28/17 6:15 PM, 박경일 wrote: > > Dear experts, I am sorry for asking again. > > I have some problems in running recon-all. > Recon-all process was shut down with this error message > > ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm > ***FAILED*** (p=0.0000, pval=0.0000 < threshold=0.0050) > > Manual Talairach alignment may be necessary, or > > include the -notal-check flag to skip this test, > > making sure the -notal-check flag follows -all > > or -autorecon1 in the command string." > > > I guess this is because of low resolution or small size of images. > > is it right? Thank you so much for you help in advance. > > > FYI, log file is attached. > > Kyung > > > _______________________________________________ > Freesurfer mailing > listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > -- Kyung-Il Park, MD, PhD. Professor, Department of Neurology, Seoul National University Hospital; Seoul National University Hospital Healthcare System Gangnam Center. Office: 82-2-2112-5756 / Fax: 82-2-2112-5635 Email: kip...@snuh.org / ideo...@gmail.com
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