Another issue is that the T1 images they have provided me have been
preprocessed with AFNI, and I have to work with FSL format. So, I have to
go back with a function called 3dAFNItoNIFT but I have not never done this
before....could you help me?

2017-12-23 22:01 GMT+01:00 Rosalia Dacosta Aguayo <rdacos...@gmail.com>:

> Dear FreeSurfer team,
>
> I have run recon-all and I have done smoothing in a sample of 24
> participants which are divided into 3 groups.
> Now that I know which smoothing I would like to use, I am a bit lost
> regarding which of the files generated should I use and how I should
> concatenate them. It is my first time with FreeSurfer and I would much
> appreciate your help here.
> FreeSurfer version is the last release.
> I am working with Linux mint.
> Merry Christmas,
> Rosalia
>
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