Can you try something for me? Run your command with -monly sxa.m This will create the sxa.m file. Then start matlab and run that file
On 12/13/2017 03:19 PM, Yagmur Ozdemir 19 wrote: > Yes it terminates prematurely. > > Best > Idil > ________________________________________ > From: freesurfer-boun...@nmr.mgh.harvard.edu > [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas Greve > [gr...@nmr.mgh.harvard.edu] > Sent: Wednesday, December 13, 2017 5:50 PM > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] JRE error in fsfast/matlab > > By default the graphics are turned off when running selxavg-sess. I often see > that error message, but it never ends up causing the program to terminate. Is > your process terminating prematurely? > > On 12/13/17 10:24 AM, Yagmur Ozdemir 19 wrote: > Hello FreeSurfer experts, > > I have been running into a matlab-related problem that I was wondering if > anyone came across. I am using Matlab2017b with Freesurfer 6.0. Whenever I > run selxavg-sess<https://surfer.nmr.mgh.harvard.edu/fswiki/selxavg-sess> > command, the matlab tries to find the OpenGL rendering, then gives a Java > fatal error with a failure to find the Java Runtime Environment and exits. (I > don't have the command outputs with me right now, sorry.) I have been trying > to fix it with getting a better graphics card, OpenGL, getting Octave etc but > this error didn't come up when I was using an earlier version of Matlab. I > would appreciate any help. > > Best > Idil > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
