This is a bug in make_average_subject. I have created patch which you can get from here:
ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/6.0.0-patch/ Follow the instructions in the README file for this bug. Please let me know if this works. doug On 11/21/2017 10:03 AM, Duran, Tugce wrote: > > Dear FreeSurfer Experts, > > I’m getting an error in make_average_subject and can’t find the reason. > > Please see the following for the error log from recon-all.log: > > *Loading aseg from > /gpfs/projects/RadImagSci/CFN/test-SDA-import/VTRAK4/xserveraids/vtrak4/mci/IMAGENE/NIFTI_CENTRAL/IMAGENE_BL_DENOISED_DEOBLIQUE_FREESURFER60_DEFAULT_KARST_10092017_RES/fsaverage_denoised-deoblique-default-nov-15-2017-ALL_DX_karstdesktop/mri/aseg.presurf.hypos.mgz* > > *ASeg Vox2RAS: -----------* > > *-1.00000 0.00000 0.00000 128.00000;* > > *0.00000 0.00000 1.00000 -128.00000;* > > *0.00000 -1.00000 0.00000 128.00000;* > > *0.00000 0.00000 0.00000 1.00000;* > > *mghRead(mri/norm.mgz, -1): could not open file* > > *-------------------------* > > ** > > *Labeling Slice* > > *relabeling unlikely voxels in interior of white matter* > > *mri/norm.mgz: could not load norm volume from (null)* > > ** > > *Linux i1.karst.uits.iu.edu 2.6.32-696.13.2.el6.x86_64 #1 SMP Fri Sep > 22 12:32:14 EDT 2017 x86_64 x86_64 x86_64 GNU/Linux* > > ** > > *recon-all -s > fsaverage_denoised-deoblique-default-nov-15-2017-ALL_DX_karstdesktop > exited with ERRORS at Wed Nov 15 19:14:17 EST 2017* > > ** > > ** > > It appears that during the process it doesn’t create the norm.mgz file > to read or open it in the later processes (I think?). What can I do to > fix this error? > > Thanks, > > Tugce** > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
