Hi Paul, you can try to re-run from scratch (ensure there is enough space on the disk) and if you can replicate the problem start dropping some of the flags (like the parallel and the bigventricles etc, to find out if this is caused by one of the flags.)
Anyway it looks more like an IO problem ncopen: filename "./tmp.mri_nu_correct.mni.53099/nu1.mnc": Not a netCDF file miopen: MINC package entry point Error opening ./tmp.mri_nu_correct.mni.53099/nu1.mnc mincRead(): error reading volume from file ./tmp.mri_nu_correct.mni.53099/nu1.mnc is that file even there? Best, Martin > On 8. Nov 2017, at 19:56, miracle ozzoude <miracoo...@gmail.com> wrote: > > Hello FreeSurfer, > > While running base step of the longitudinal pipeline, i got the following > error (please see the rec-all.log file for more details). How do i solve this > problem? Thank you > > Best, > Paul > <recon-all.log>_______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
