hey melanie, awesome - if you've already done edits, it should be quite straightforward to rerun with freesurfer 6. any chance you can run it through? otherwise i can send you a filedrop link off the list.
cheers, satra On Thu, Oct 19, 2017 at 4:13 PM, Melanie Ganz <melanie.g...@nru.dk> wrote: > Hi Sean, Satra and Bruce, > > We just recently ran them all with v5.3 and did quite a few edits, > especially to the subject ending in 10. Remember, we asked you for help, > Bruce? 5 > I had asked before if someone was interested in us uploading the work > since we took quite some care in doing it, but there was no answer. I can > upload them to a Martinos file drop tomorrow morning if you want. > > Cheers, > Mel > > > On Oct 19, 2017 9:41 PM, Satrajit Ghosh <sa...@mit.edu> wrote: > > hi sean, > > i think i ran those in june 2013 at ohbm. however, my recollection of how > it failed is encoded in that mail thread. > > it may be worthw hile to just run through those images with freesurfer 6.0. > > since it's only 6 brains, we can try running it through again. > > cheers, > > satra > > On Thu, Oct 19, 2017 at 3:29 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> > wrote: > > Hi Seán > > I'm not sure. I think Satra posted the original issue, so maybe he knows. > Satra? > > > cheers > Bruce > On Thu, 19 Oct 2017, Seán Froudist Walsh wrote: > > > Hi, > Was the following issue ever solved? (sorry hit send too early!) > https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg50297.html > I tried and, like the previous two people it fails on mri_watershed. > https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg50297.html > Best wishes, > Sean > > Hi Mike > > it's hard to say without looking at the data. if you upload the > subject dir we will take a look > > Bruce > On Thu, 24 Nov 2016, Michael Craig wrote: > > Hi All, > I am trying to run recon-all on the Allen Brain Institute T1 images. It > works > without any issue on all but one subject (H0351.1009). > > I saw this post from a few years ago describing the exact problem I’m > having, > but don’t see a solution. Has anyone figured out how to get this subject > to run > in recon-all? Or is it simply a matter of there not being enough contrast > between grey and white matter? Thanks for the help! > > https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2013- > July/031482.html > > Best wishes, > Mike > > > On 19 October 2017 at 15:05, Seán Froudist Walsh <froud...@tcd.ie> wrote: > Hi, > Was the following issue ever solved? > > > > > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > >
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