I don't know what you are asking
On 10/6/17 9:24 AM, std...@virgilio.it wrote: > Thank you very much. > Where I should put 0 0 0 0 .25 .25 .25 .25? > Which are the contrast reported below that I should modify? > > C1) gr1-gr2_intercept 1 -1 0 0 0 0 0 0 > C2 )gr1-gr2_slope 0 0 0 0 1 -1 0 0 > C3) gr1-gr3_intercept 1 0 -1 0 0 0 0 0 > C4) gr1-gr3_slope 0 0 0 0 1 0 -1 0 > C5) gr1-gr4_intercept 1 0 0 -1 0 0 0 0 > C6) gr1-gr4_slope 0 0 0 0 1 0 0 -1 > C7) gr2-gr3_intercept 0 1 -1 0 0 0 0 0 > C8) gr2-gr3_slope 0 0 0 0 0 1 -1 0 > C9) gr2-gr4_intercept 0 1 0 -1 0 0 0 0 > C10) gr2-gr4_slope 0 0 0 0 0 1 0 -1 > C11) gr3-gr4_intercept 0 0 1 -1 0 0 0 0 > C12) gr3-gr4_slope 0 0 0 0 0 0 1 -1 > C13) gr1+gr2-vs-gr3+gr4.intercept 0.5 0.5 -0.5 -0.5 0 0 0 0 > C14) gr1+gr2-vs-gr3+gr4.slope 0 0 0 0 0.5 0.5 -0.5 -0.5 > C15) group.effect.intercept > 1 -1 0 0 0 0 0 0 > 1 0 -1 0 0 0 0 0 > 1 0 0 -1 0 0 0 0 > C16) group.effect.slope > 0 0 0 0 1 -1 0 0 > 0 0 0 0 1 0 -1 0 > 0 0 0 0 1 0 0 -1 > > >> ----Messaggio originale---- >> Da: "Douglas Greve" <gr...@nmr.mgh.harvard.edu> >> Data: 3-ott-2017 16.19 >> A: <freesurfer@nmr.mgh.harvard.edu> >> Ogg: Re: [Freesurfer] R: Re: R: Re: R: Re: Map of covariance >> >> probably you want 0 0 0 0 .25 .25 .25 .25 >> >> >> >> On 10/3/17 10:10 AM, std...@virgilio.it wrote: >>> Many thank for your response. >>> Claryfing my question on point 3, >>> When I look in group.effect.slope, the map show the group difference > removing >>> the effect of the covariate. >>> Conversely, I would to obtain the map reporting only the effect of > covariate >>> on dependent variable (functional connectivity). >>> Is possible to look on it? >>> Regards >>> Stefano >>> >>> >>>> ----Messaggio originale---- >>>> Da: "Douglas N Greve" <gr...@nmr.mgh.harvard.edu> >>>> Data: 2-ott-2017 16.58 >>>> A: <freesurfer@nmr.mgh.harvard.edu> >>>> Ogg: Re: [Freesurfer] R: Re: R: Re: Map of covariance >>>> >>>> >>>> >>>> On 10/01/2017 05:08 PM, std...@virgilio.it wrote: >>>>> Hi, >>>>> on 4 groups, 1 covariate (4GV1) >>>>> >>>>> I run mri_glmfit using the following .mtx >>>>> >>>>> C1) gr1-gr2_intercept 1 -1 0 0 0 0 0 0 >>>>> C2 )gr1-gr2_slope 0 0 0 0 1 -1 0 0 >>>>> C3) gr1-gr3_intercept 1 0 -1 0 0 0 0 0 >>>>> C4) gr1-gr3_slope 0 0 0 0 1 0 -1 0 >>>>> C5) gr1-gr4_intercept 1 0 0 -1 0 0 0 0 >>>>> C6) gr1-gr4_slope 0 0 0 0 1 0 -1 0 >>>> should be >>>> >>>> 0 0 0 0 1 0 0 -1 >>>> >>>>> C7) gr2-gr3_intercept 0 1 -1 0 0 0 0 0 >>>>> C8) gr2-gr3_slope 0 0 0 0 0 1 -1 0 >>>>> C9) gr2-gr4_intercept 0 1 0 -1 0 0 0 0 >>>>> C10) gr2-gr4_slope 0 0 0 0 0 1 0 -1 >>>>> C11) gr3-gr4_intercept 0 0 1 -1 0 0 0 0 >>>>> C12) gr3-gr4_slope 0 0 0 0 0 0 1 -1 >>>>> C13) gr1+gr2-vs-gr3+gr4.intercept 0.5 0.5 -0.5 -0.5 0 0 0 0 >>>>> C14) gr1+gr2-vs-gr3+gr4.slope 0 0 0 0 0.5 0.5 -0.5 -0.5 >>>>> C15) group.effect.intercept >>>>> 1 -1 0 0 0 0 0 0 >>>>> 1 0 -1 0 0 0 0 0 >>>>> 1 0 0 -1 0 0 0 0 >>>>> C16) group.effect.slope >>>>> 0 0 0 0 1 -1 0 0 >>>>> 0 0 0 0 1 0 -1 0 >>>>> 0 0 0 0 1 0 0 -1 >>>>> >>>>> Please: >>>>> 1) Could you check whether the all .mtx are complete and corrected, in >>>>> particular the gr1+gr2-vs-gr3+gr4.intercept and the gr1+gr2-vs-gr3+gr4. >>> slope? >>>> they look correct, except for the one i noted >>>>> 2) Could you explain the meaning of: >>>>> gr1+gr2-vs-gr3+gr4.slope - does the average slope of grp1 and grp2 differ >>> from that of grp3 and 4 >>>>> gr1+gr2-vs-gr3+gr4.intercept - same >>>>> group.effect.slope - interaction between group and covariate >>>>> group.effect.intercept - is there an effect of group on the inercept >>>>> 3) Which is the contrast identifying the effect of covariate on group >>>>> differences? >>>> not sure what you mean >>>>> Thanks >>>>> >>>>> Best regards >>>>> >>>>> >>>>> Stefano >>>>> >>>>> >>>>> >>>>>> ----Messaggio originale---- >>>>>> Da: "Douglas N Greve" <gr...@nmr.mgh.harvard.edu> >>>>>> Data: 5-set-2017 22.59 >>>>>> A: <freesurfer@nmr.mgh.harvard.edu> >>>>>> Ogg: Re: [Freesurfer] R: Re: Map of covariance >>>>>> >>>>>> you would need to create a contrast to look for the interaction. If you >>>>>> have four gruops and 1 covariate, then it would be >>>>>> >>>>>> 0 0 0 0 1 -1 0 0 >>>>>> >>>>>> 0 0 0 0 1 0 -1 0 >>>>>> >>>>>> 0 0 0 0 1 0 0 -1 >>>>>> >>>>>> >>>>>> >>>>>> On 09/05/2017 04:32 PM, std...@virgilio.it wrote: >>>>>>> Hi, >>>>>>> e.g., by considering two or more groups, I would like to map the > clusters >>>>>>> reporting the covariance between the functional connectivity or > cortical >>>>>>> thickness (dependent variable) and age, tacking in account the group >>>>>>> differences. >>>>>>> Instead, I'm not interested to map the group differences, taking in >>> account >>>>>>> the nuisance factors. >>>>>>> Thanks, >>>>>>> Stefano >>>>>>> >>>>>>>> ----Messaggio originale---- >>>>>>>> Da: "Douglas N Greve" <gr...@nmr.mgh.harvard.edu> >>>>>>>> Data: 5-set-2017 18.12 >>>>>>>> A: <freesurfer@nmr.mgh.harvard.edu> >>>>>>>> Ogg: Re: [Freesurfer] Map of covariance >>>>>>>> >>>>>>>> I don't understand what you are asking. can you elaborate? >>>>>>>> >>>>>>>> >>>>>>>> On 08/30/2017 12:50 PM, std...@virgilio.it wrote: >>>>>>>>> Hi list, >>>>>>>>> by applying a design e.g. 4GV1 in fsgd I could assess the dependence >>>>>>>>> of group differences taking in account the effect of covariate. >>>>>>>>> Anyway, where I should look if I want assess the the map showing the >>>>>>>>> clusters in which the dependent variable is associated to covariate, >>>>>>>>> tacking in account the group difference? Please could you suggest my >>>>>>>>> the path? >>>>>>>>> Thanks >>>>>>>>> >>>>>>>>> Stefano >>>>>>>>> >>>>>>>>> >>>>>>>>> _______________________________________________ >>>>>>>>> Freesurfer mailing list >>>>>>>>> Freesurfer@nmr.mgh.harvard.edu >>>>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>>>>> -- >>>>>>>> Douglas N. Greve, Ph.D. >>>>>>>> MGH-NMR Center >>>>>>>> gr...@nmr.mgh.harvard.edu >>>>>>>> Phone Number: 617-724-2358 >>>>>>>> Fax: 617-726-7422 >>>>>>>> >>>>>>>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>>>>>>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>>>>>>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>>>>>> Outgoing: ftp://surfer.nmr.mgh.harvard. > edu/transfer/outgoing/flat/greve/ >>>>>>>> _______________________________________________ >>>>>>>> Freesurfer mailing list >>>>>>>> Freesurfer@nmr.mgh.harvard.edu >>>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>>>>> >>>>>>>> >>>>>>>> The information in this e-mail is intended only for the person to whom >>> it >>>>> is >>>>>>>> addressed. If you believe this e-mail was sent to you in error and the >>> e- >>>>> mail >>>>>>>> contains patient information, please contact the Partners Compliance >>>>> HelpLine >>>>>>> at >>>>>>>> http://www.partners.org/complianceline . If the e-mail was sent to you >>> in >>>>>>> error >>>>>>>> but does not contain patient information, please contact the sender > and >>>>>>> properly >>>>>>>> dispose of the e-mail. >>>>>>>> >>>>>>>> >>>>>>> _______________________________________________ >>>>>>> Freesurfer mailing list >>>>>>> Freesurfer@nmr.mgh.harvard.edu >>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>>>> >>>>>>> >>>>>> -- >>>>>> Douglas N. Greve, Ph.D. >>>>>> MGH-NMR Center >>>>>> gr...@nmr.mgh.harvard.edu >>>>>> Phone Number: 617-724-2358 >>>>>> Fax: 617-726-7422 >>>>>> >>>>>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>>>>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>>>>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>>>> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >>>>>> >>>>>> _______________________________________________ >>>>>> Freesurfer mailing list >>>>>> Freesurfer@nmr.mgh.harvard.edu >>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>>> >>>>> _______________________________________________ >>>>> Freesurfer mailing list >>>>> Freesurfer@nmr.mgh.harvard.edu >>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>> >>>>> >>>> -- >>>> Douglas N. Greve, Ph.D. >>>> MGH-NMR Center >>>> gr...@nmr.mgh.harvard.edu >>>> Phone Number: 617-724-2358 >>>> Fax: 617-726-7422 >>>> >>>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
