Hello,
I found a small bug in recent dev version bin quantifyHAsubregions.sh:
leftVolFile="$resultsDirectory/$subjectName/mri/lh.${suffix}Volumes-${suffix}.v20.txt"
rightVolFile="$resultsDirectory/$subjectName/mri/rh.${suffix}Volumes-${suffix}.v20.txt"
Should say
leftVolFile="$resultsDirectory/$subjectName/mri/lh.${suffix}Volumes-${
*prefix*}.v20.txt"
rightVolFile="$resultsDirectory/$subjectName/mri/rh.${suffix}Volumes-${
*prefix*}.v20.txt"
because as specified "T1" is the ${prefix} which is how the subfields file
names end. Obviously, can flip suffix and prefix throughout so it is more
intuitive. Seems to work fine after this adjustment.
Josh
--
Joshua C. Gray, PhD
Psychology Instructor
Center for Deployment Psychology
Work: (301) 816-4768
www.deploymentpsych.org
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