Hi Doug, Thanks for the clarification. According to the PetSurfer guide, it is stated that there are “ways to customise this segmentation to use ROI definitions”. How may I go about doing that? Appreciate your help.
Best Wishes, Elijah Dr. Elijah Mak, Research Associate Department of Psychiatry Old Age Psychiatry Group | Cambridge Intellectual & Developmental Disabilities Research Group University of Cambridge, Trinity College, CB21TQ, UK http://www.neuroscience.cam.ac.uk/directory/profile.php?fkm24 On 12 September 2017 at 17:27:10, Douglas N Greve (gr...@nmr.mgh.harvard.edu) wrote: what do you mean? You can only get gtm stats from the parcellations that you have used during the process. You can't get new values at the end. If you want to use different ROIs, then you need to run gtmseg again with a different parcellation, then run mri_gtmpvc with the new gtmseg On 09/12/2017 10:42 AM, Elijah Mak wrote: > Hi Doug, > > Would it be possible to use the gtmstats2table command to extract GTM > values from other parellations? > > Thanks! > > Best Wishes, > Elijah > > > *Dr. Elijah Mak, Research Associate > *Department of Psychiatry > Old Age Psychiatry Group | Cambridge Intellectual & Developmental > Disabilities Research Group > University of Cambridge, > Trinity College, CB21TQ, UK > http://www.neuroscience.cam.ac.uk/directory/profile.php?fkm24 > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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