what happens if you run
recon-all -s subject -cortribbon
does it create the ribbon.mgz?
On 9/6/17 7:53 AM, Maria Gloria Rossetti wrote:
Hi Doug,
As you suggested, I copied the mri_segstats patch
(mri_segstats.centos6_x86_64 because my system is centos6) to my
freesurfer/bin location and
reran the pipeline. However, I'm getting the same issue. Autorecon2
seems unable to create the ribbon.mgz file.
Do you have any other suggestions for fixing this error?
Attached you can find the recon-all.log file
Thanks,
Gloria
------------------------------------------------------------------------
*Da: *"Douglas N Greve" <gr...@nmr.mgh.harvard.edu>
*A: *"freesurfer" <freesurfer@nmr.mgh.harvard.edu>
*Inviato: *Martedì, 5 settembre 2017 18:09:31
*Oggetto: *Re: [Freesurfer] patch for ribbon mgz failure
Use the mri_segstats from this URL that is appropriate for your system
(eg, if you're running centos6, the download that patch and copy it to
mri_segstats)
https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/5.3.0-patch/
On 08/30/2017 06:32 AM, Maria Gloria Rossetti wrote:
> Hi freesurfer team,
>
> I got the same error described here:
>
http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg45983.html
> and, as suggested, I tried to copy in $FREESURFER_HOME/bin/ the patch
> from
>
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_segstats
> but I cannot find the URL.
> I also found some patches here :
> https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/5.3.0-patch/
> but I don't know which one I'm supposed to use.
>
> Any advice?
>
> Thanks!
> Gloria
>
>
>
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> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
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