On 08/30/2017 03:57 PM, Torrado Carvajal, Angel wrote: > Hello, > > I need to get the segmentation of the occipital cortex. I am > attempting to generate the corresponding ROI, using the > mri_annotation2label command and then running mris_anatomical_stats to > merge the labels and get the actual volume. I am calling > mri_annotation2label as follows: > > mri_annotation2label --subject <ID> --hemi lh --lobesStrict > lobefile --outdir 'TEMP' > > However, I have a couple of questions: > > 1. Is there any way to generate both lh and rh together? Or should I > generate separate volumes and then merge them? > For a surface-based segmentation, the hemispheres must be done separately > > 1. > > > 2. What is the structure of the lobefile? I cannot find any example > on the wiki. > This is the output annotation file (like lh.aparc.annot) > > 1. > > Thank you very much for your help! > -- > *Angel Torrado-Carvajal* > Postdoctoral Research Fellow > Pain Neuroimaging Laboratory > MGH/HST Athinoula A. Martinos Center for Biomedical Imaging > Building 149, Room 1101, 13th Street, Charlestown, MA 02129 USA > atorradocarva...@mgh.harvard.edu | www.nmr.mgh.harvard.edu > <http://www.nmr.mgh.harvard.edu> | @MGHMartinos > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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