what is this causing an error in?
On 08/29/2017 06:50 AM, Ernst Schwartz wrote: > Hi! > > It seems that in FreeSurfer 6, the comma between “CortexVol” and > “Total cortical gray matter volume” is missing > > here’s the relevant part of one of my stats-files: > > # Table of FreeSurfer cortical parcellation anatomical statistics > # > # CreationTime 2017/08/23-20:19:44-GMT > # generating_program > /software/easybuild/software/FreeSurfer/6.0.0-centos6_x86_64/bin/mris_anatomical_stats > # cvs_version $Id: mris_anatomical_stats.c,v 1.79 2016/03/14 15:15:34 > greve Exp $ > # mrisurf.c-cvs_version $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 > zkaufman Exp $ > # cmdline > /software/easybuild/software/FreeSurfer/6.0.0-centos6_x86_64/bin/mris_anatomical_stats > > -mgz -cortex > /data/datasets/pediatric/CLG//sub-A00057725_ses-CLG2/label/lh.cortex.label > -a > /data/datasets/pediatric/CLG//sub-A00057725_ses-CLG2/label/lh.aparc.a2009s.annot > > -b -f > /data/datasets/pediatric/CLG//sub-A00057725_ses-CLG2/stats/lh.aparc.a2009s.pial.stats > > sub-A00057725_ses-CLG2 lh pial > # sysname Linux > # hostname cn4.cir.meduniwien.ac.at <http://cn4.cir.meduniwien.ac.at> > # machine x86_64 > # user ernst > # > # SUBJECTS_DIR /data/datasets/pediatric/CLG/ > # anatomy_type surface > # subjectname sub-A00057725_ses-CLG2 > # hemi lh > # AnnotationFile > /data/datasets/pediatric/CLG//sub-A00057725_ses-CLG2/label/lh.aparc.a2009s.annot > # AnnotationFileTimeStamp 2017/08/23 22:18:44 > # Measure Cortex, NumVert, Number of Vertices, 121790, unitless > # Measure Cortex, PialSurfArea, Pial Surface Total Area, 105158, mm^2 > # Measure Cortex, MeanThickness, Mean Thickness, 2.80672, mm > # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, > 1051285.000000, mm^3 > # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation > Volume Without Ventricles, 1040194.000000, mm^3 > # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain > Segmentation Volume Without Ventricles from Surf, 1039128.584538, mm^3 > # Measure Cortex, *CortexVol Total* cortical gray matter volume, > 532907.136355, mm^3 > # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, > 926570.584538, mm^3 > # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, > Supratentorial volume, 918874.584538, mm^3 > # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total > Intracranial Volume, 1254280.104289, mm^3 > > > cheers, > Ernst > > > ~ > > Ernst Schwartz > Computational Image Research (CIR) Lab > Department of Biomedical Imaging and Image-guided Therapy > Medical University Vienna, Austria > > ---------------------------------------------------------------------- > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
