Hi Emma,
Thank you for your response.
I am running my recons using V5.3 and V6.0
In the data base I have ~200 T1 images and for some I have FLAIR images.
When I run recon all with the flag FLAIR I get the file
"aparc.DKTatlas+aseg.mgz" in FS5.3 and FS6.0
If I run recon-all without the flag FLAIR i don't see the file
aparc.DKTatlas+aseg.mgz
as an output of FS5.3 or FS6.0
I am a bit confused about this!! Is this atlas FALIR-based or I am doing
something wrong?!
> -------- Original Message --------
> Subject: Re: [Freesurfer] aparc.DKTatlas+aseg.mgz
> Local Time: August 31, 2017 3:11 PM
> UTC Time: August 31, 2017 7:11 PM
> From: ebo...@mgh.harvard.edu
> To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>, John Anderson
> <john.ande...@protonmail.com>
>
> Hi John,
>
> Which version of FreeSurfer are you running?
>
> Emma
>
> ---------
>
> Emma Boyd
>
> Research Technician II
>
> Laboratory for Computational Neuroimaging
>
> Martinos Center for Biomedical Imaging
>
> ---------------------------------------------------------------
>
> From: freesurfer-boun...@nmr.mgh.harvard.edu
> <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of John Anderson
> <john.ande...@protonmail.com>
> Sent: Thursday, August 31, 2017 12:17 PM
> To: Freesurfer support list
> Subject: Re: [Freesurfer] aparc.DKTatlas+aseg.mgz
>
> Dear experts,
> looking into the output of Freesurfer in this page
> https://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllOutputFiles
> I see that there should be a file named "aparc.DKTatlas+aseg.mgz". Is this
> atlas can be generated with the presence of FLAIR images.
>
> When i run recon-all without FLAIR or T2 I don't see this atlas!! Is this
> atlas FLAIR -based?
>
> thank you for any clarification
> John
>
>> -------- Original Message --------
>> Subject: aparc.DKTatlas+aseg.mgz
>> Local Time: August 30, 2017 7:49 PM
>> UTC Time: August 30, 2017 11:49 PM
>> From: john.ande...@protonmail.com
>> To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
>>
>> Dear experts,
>> looking into the output of Freesurfer in this page
>> https://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllOutputFiles
>> I see that there should be a file named "aparc.DKTatlas+aseg.mgz". Do I need
>> FLAIR images to get this file.
>>
>> I ran the command recon-all --s subj --all and I can';t find this file
>>
>> thank you for any clarification
>> John
>
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