We encountered a hard failure, below is the tail of the log. We are currently
running Freesurfer 6 again locally to see if it succeeds on a desktop machine
(this is the first time encountering a hard failure on the XNAT server). Any
suggestions?
-merging segment 180 into 178
160 defects to be corrected
0 vertices coincident
reading input surface
/data/build/nnac/20170818_114535/alamode_MRI08162017/20170818114538/alamode_MRI08162017/surf/lh.qsphere.nofix...
reading brain volume from brain...
reading wm segmentation from wm...
Computing Initial Surface Statistics
-face loglikelihood: -8.7982 (-4.3991)
-vertex loglikelihood: -6.2982 (-3.1491)
-normal dot loglikelihood: -3.5611 (-3.5611)
-quad curv loglikelihood: -6.1931 (-3.0965)
Total Loglikelihood : -24.8505
CORRECTING DEFECT 0 (vertices=40706, convex hull=11265, v0=89)
XL defect detected...
Segmentation fault (core dumped)
Linux hhvrixnatp01 2.6.32-431.el6.x86_64 #1 SMP Sun Nov 10 22:19:54 EST 2013
x86_64 x86_64 x86_64 GNU/Linux
recon-all -s alamode_MRI08162017 exited with ERRORS at Mon Aug 21 19:27:09 CDT
2017
To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
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