I am attempting to create a volume from a surface. My ultimate goal is to obtain a mask that includes everything "inside" the white matter surfaces. wm.mgz is close, but it would nicer to just get a mask from lh.white and rh.white. I would like these masks to be in the subject's native space. However I try the following command and see the resulting error:
mri_surf2vol --o coleMRI06162006/mri/lh.white.mask.mgz --mkmask --hemi lh --identity coleMRI06162006 --template coleMRI06162006/mri/orig/orig.mgz gdiagno = -1 Using identity matrix for registration mghRead(coleMRI06162006/mri/orig/orig.mgz, -1): could not open file mri_surf2vol ERROR: reading coleMRI06162006/mri/orig/orig.mgz header I'm obviously doing something wrong here, but I'm not sure what needs to change. I used --identity because native space, and it wouldn't let me run the command without specifying --template, which I'm not sure I understand, because, again, target is native space. Please illuminate me, Thank you, - Eli Houston Methodist. Leading Medicine. U.S. News & World Report has recognized Houston Methodist as one of the nation’s top 20 hospitals, placing it for the second time on the magazine’s prestigious Honor Roll. It is also designated as a Magnet hospital for excellence in nursing. Visit us at houstonmethodist.org. Follow us at twitter.com/MethodistHosp and facebook.com/HoustonMethodist. ***CONFIDENTIALITY NOTICE*** This e-mail is the property of Houston Methodist and/or its relevant affiliates and may contain restricted and privileged material for the sole use of the intended recipient(s). Any review, use, distribution or disclosure by others is strictly prohibited. If you are not the intended recipient (or authorized to receive for the recipient), please contact the sender and delete all copies of the message. Thank you.
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