You can use mri_segstats with either the --sum option (for an input with
one time point) or --avgwf (for multiple). Pass your mask with --seg. By
default it will give you both outside the mask (first column) and inside
the mask (second column).
On 7/28/17 10:44 AM, Elijah Mak wrote:
Hi Freesurfer Team,
I have previously used mri_binarize to derive the mask.mgh from the
sig.mgh after a first-level group comparison of cortical thickness.
Now, I would like to extract the vertex data from from another
modality surface within and outside the mask in individual subjects.
Is there an nice workflow to do that?
Thanks a lot. I hope my question made sense!
Best Wishes,
Elijah
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