Hi Fatima - mri_aparc2aseg is the right command, but you should specify the name of your annotation instead of aparc.a2009s (which is one of the standard freesurfer annotations). So if your annotation is lh.mine.annot and rh.mine.annot, then you need "--annot mine².
Anastasia. On 6/14/17, 3:42 PM, "freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Almarshad F." <freesurfer-boun...@nmr.mgh.harvard.edu on behalf of f.almars...@soton.ac.uk> wrote: > >Dear FreeSurfer expert > >is it possible to create "aparc.a2009s+aseg.mgz" from custom parcellation >i have.. > >i used label2annot to create the 2.annot files from my none overlapping >labels.. ! >i think >mri_aparc2aseg<https://surfer.nmr.mgh.harvard.edu/fswiki/mri_aparc2aseg> >--s <subjid> --ribbon --annot aparc.a2009s would create the file .. >however i could not understand how the command works, in terms of my two >(label/lh.aparc.annot and label/rh.aparc.annot).. if you please can >clarify what are the steps i need to make to get the >aparc.a2009s+aseg.mgz based on my parcellation > > >many thinks > >fatima > > > > > >_______________________________________________ >Freesurfer mailing list >Freesurfer@nmr.mgh.harvard.edu >https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
