Hi Jasmin
typically that means there is a big topological defect, which definitely
can be caused by motion. What is the last couple of lines of the
recon-all.log file of one of the subjects? Can you upload an image we can
look at?
cheers
Bruce
On Wed, 31 May 2017,
Jasmin Alves wrote:
Hello,
I have used FS6.0 to do recon-all on about 57 brains, but for some reason,
recon-all is not working on some brains, recon-all is not able to get past
"Automatic topology fixer", after the command has been running for 24 hours.
Is it possible there is too much motion in the image? Or does FS6.0
possibly take longer to complete for some brains?
Thanks,
Jasmin
--
Jasmin Alves
Doctoral Candidate
Medical Biology Graduate Program
University of Southern California
jal...@usc.edu
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