You can use the aseg.mgz (in v6) or aparc+aseg.mgz in any version.
On 05/18/2017 10:42 AM, Karteek Popuri wrote: > Hi, > My goal is to use the best possible skull-stripped version of the input MRI. > Is brainmask.mgz the one? or I was wondering if anyone has tried improving > the brainmask.mgz further by masking it out using the aseg.mgz. Will that > help with regards to getting rid of the dura in the brainmask.mgz. My > intuition is because the generation of aseg.mgz includes a surface-based > algorithm, the smoothing constraints of the surface evolution should minimize > the "leakage" of the GM surface into the dura, hence the aseg might have some > dura but not as much as the brainmask. Will be thankful for any > suggestions/comments. > Karteek > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
