I just tried it, and there was not a problem. Are you sure that 
hem.fsaverage.nii.gz has non-zeros in it? Can you send it to me? What 
platform are you using?


On 04/26/2017 11:55 AM, dongnandi1 wrote:
>
> Dear FS experts,
>
> I’m trying to transform some files from fsaverage space to fsaverage5 
> space using mri_surf2surf(FS version: 6.0), however, it is weird that 
> the results turn out to be all zeros on the fsaverage5 surface, the 
> command line I used is :
>  mri_surf2surf –srcsubject fsaverage –sval ${hemi}.fsaverage.nii.gz 
> –hemi ${hemi}  --cortex –trgsubject fsaverage5 –tval 
> ${hemi}.fsaverage5.nii.gz –surfreg sphere.reg.
> There is no error reported.
>
> The strange thing is that it works well using FS5.3, it failed after I 
> update to FS 6.0. Any suggestion of solving this?
>
> Many thanks!
> Best!
> Dong
>
>
>
>
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