Dear Experts, I have installed in /usr/local/freesurfer. I am trying to follow the command given in the freesurfer web page.
$> export FREESURFER_HOME=/usr/local/freesurfer $> source $FREESURFER_HOME/SetUpFreeSurfer.sh But I could not figure out the .sh file in the freesurfer folder. Please see the list of files in the freesurfer folder given below. List of files in the freesurfer folder; /usr/local/freesurfer/average /usr/local/freesurfer/fsafd /usr/local/freesurfer/fsfast /usr/local/freesurfer/lib /usr/local/freesurfer/sessions /usr/local/freesurfer/tktools /usr/local/freesurfer/trctrain /usr/local/freesurfer/DefectLUT.txt /usr/local/freesurfer/FreeSurferColorLUT.txt /usr/local/freesurfer/FreeSurferEnv.csh /usr/local/freesurfer/LICENSE /usr/local/freesurfer/SetUpFreeSurfer.csh /usr/local/freesurfer/sources.csh /usr/local/freesurfer/sources.sh /usr/local/freesurfer/tkmeditParcColorsCMA /usr/local/freesurfer/VERSION /usr/local/freesurfer/WMParcStatsLUT.txt You can notice that there is no SetUpFreeSurfer.sh file. Details about my pc; Ubuntu 16.04 LTS, 64 bit is installed. Running w8.1 via virtual box. Freesurfer is installed in Ubuntu OS. I am using bash shell. pc@RB:~$ echo $0 bash pc@RB:~$ echo $SHELL /bin/bash pc@RB:~$ ps -p "$$" PID TTY TIME CMD 3706 pts/1 00:00:00 bash Need your help to run freesurfer in my pc. Thanks in advance Ramesh
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