Just a correction, The original image matrix size is (256x256x160) and the resulted image matrix size is (256x256x256).
On Mon, Apr 3, 2017 at 4:35 PM, Dhaval Shah <ds...@bnac.net> wrote: > Hi All, > > I am new and a very basic question about freesurfer processing. > > I ran recon-all on a high res-T1 image(128x128x80 matrix size), but after > recon-all the folder mri contains resulted (brain.mgz and orig.mgz) T1 > images has (127x128x128 matrix size). > > 1) how come the dimensions are changed? Is it normal? > 2) how can i keep the dimensions same as the original? > 3) is it possible that i will always get the higher matrix size image > data? > > for simplicity, i converted resulted orig.mgz to nii format and loaded it > in to fslview. Please find the first image (Original) and the second image > (after recon-all but orig.mgz). > > Your help is greatly appreciated. > > -- > Kind regards, > Dhaval Shah > > MRI Research fellow,MRI Physicist,Clinical Trial Research Staff > Buffalo Neuroimaging Analysis Center > State University of New York at Buffalo > Department of Neurology > 100 High St., D-2, Buffalo, NY 14203ds...@bnac.net//http://mbl.bnac.net > > -- Kind regards, Dhaval Shah MRI Research fellow,MRI Physicist,Clinical Trial Research Staff Buffalo Neuroimaging Analysis Center State University of New York at Buffalo Department of Neurology 100 High St., D-2, Buffalo, NY 14203ds...@bnac.net//http://mbl.bnac.net
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