not that I know of. I think you'll have to do it by hand (sorry)
On 3/21/17 11:02 AM, Ahearn, T wrote:
Hello
I need separate grey and white volumes for the frontal and temporal
lobes. I have values for grey volume from
mri_annotation2label --subject 01 --hemi lh --lobesStrict lobar_annotation
mris_anatomical_stats on the lh.lobar_annotation.annot file to
generate a text file.
I’ve also run similar to the following and now have a text file
wmparc.a2009.stats.
mri_aparc2aseg --s subject --labelwm --hypo-as-wm --rip-unknown
--volmask --o mri/wmparc.a2009s.mgz --a2009s --ctxseg
aparc.a2009s+aseg.mgz
mri_segstats --seg mri/wmparc.a2009s.mgz --sum
stats/wmparc.a2009s.stats --pv mri/norm.mgz --excludeid 0
--brain-vol-from-seg --brainmask mri/brainmask.mgz --in mri/norm.mgz
--in-intensity-name norm --in-intensity-units MR --subject subject
--surf-wm-vol
--ctab $FREESURFER_HOME/WMParcStatsLUT.txt --etiv
Is there a standard list of labels in this file that are used to
create the frontal and temporal lobes?
Thanks
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