Hello, Sorry for the late reply. I did try re-running it and it did work this time! Thank you.
Daniela On Mon, Mar 6, 2017 at 12:15 AM, <zkauf...@nmr.mgh.harvard.edu> wrote: > Hello Daniela, > > Ive been looking into this error, and although I am unable to replicate it > on my Mac, I do have what might be a potential solution. Could you please > source freesurfer, then run the following command. > > $> sudo -E fs_update > > Then retry the subject with the parallel flag. Please let me know how it > goes if you end up trying again. Thanks. > > -Zeke > >> I second the problem found in this thread: >> >> http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg51917.html >> >> I recently downloaded FreeSurfer v. 6 on a macOS 10.12. To work around the >> System Integrity Protection issue, I installed my freesurfer folder in a >> local "Documents" folder instead of in Applications and that seemed to >> allow me to keep System Integrity Protection enabled while running >> FreeSurfer commands. >> >> Last night I ran recon-all on the same subject simultaneously, one using >> the -parallel tag and the other without it. This morning I see that only >> the one with the -parallel tag exited with errors and it seems to be this >> same "lazy symbol" error (see attached for recon-all error log). >> >> dyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address >> Referenced from: >> /Users/Ajay/Documents/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib >> Expected in: /usr/lib/libSystem.B.dylib >> >> I can try running with System Integrity Protection off to see if that will >> make the -parallel tag work... any other thoughts? >> >> >> Thanks, >> Daniela >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
