The error message says that it cannot find a file. Does that file exist? Do you have fsaverage in your $SUBJECTS_DIR?
On 03/07/2017 06:19 PM, Limachia, Gaurang (NIH/NINDS) [F] wrote: > > Dear Freesurfer Experts, > > I was running qdec, and encountered an error while I was running the > analyze button on the qdec. Subsequently, if you can help with the > following error would greatly appreciate it. > > Continuous Variable Means (all subjects) > > 0 Intracranial_volume 1.53095e+06 157812 > > 1 Gender 1.75728 0.428726 > > Class Means of each Continuous Variable > > 1 Main 1530945.8883 1.7573 > > INFO: gd2mtx_method is dods > > Reading source surface > /raids/hmcsraid3/silvina/PMD_FATCAT2015/fsaverage/surf/lh.white > > MRISread(/raids/hmcsraid3/silvina/PMD_FATCAT2015/fsaverage/surf/lh.white): > could not open file > > No such file or directory > > mri_glmfit: could not read surface > /raids/hmcsraid3/silvina/PMD_FATCAT2015/fsaverage/surf/lh.white > > No such file or directory > > Error in Analyze: command failed: mri_glmfit --y > /raids/hmcsraid3/silvina/PMD_FATCAT2015/qdec/Untitled/y.mgh --fsgd > /raids/hmcsraid3/silvina/PMD_FATCAT2015/qdec/Untitled/qdec.fsgd dods > --glmdir /raids/hmcsraid3/silvina/PMD_FATCAT2015/qdec/Untitled --surf > fsaverage lh --C > /raids/hmcsraid3/silvina/PMD_FATCAT2015/qdec/Untitled/contrasts/lh-Avg-Intercept-thickness.mat > > --C > /raids/hmcsraid3/silvina/PMD_FATCAT2015/qdec/Untitled/contrasts/lh-Avg-thickness-Intracranial_volume-Cor.mat > > Thanks, > > > Gaurang Shyam Limachia > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
