Not sure, but probably on the order of 30min/subject
On 3/7/17 10:27 AM, West, John D. wrote: > Perfect! Thanks so much Douglas! Any idea how long that will take? > > -----Original Message----- > From: freesurfer-boun...@nmr.mgh.harvard.edu > [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve > Sent: Thursday, March 02, 2017 11:20 AM > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] Question on saving interim files when generating an > fsavearge > > Just run it with -qcache only and it will only do qcache > > > On 03/01/2017 02:48 PM, West, John D. wrote: >> Hi Douglas. >> >> Thanks for the reply. Forgive me for not responding quickly. >> >> It turns out what we really want is the interim files that are saved during >> recon-all if you add the -qcache option. Is there any way to generate those >> files after running recon-all without having to run recon-all again in its >> entirety? We would also be ok with running the sub command manually if we >> could know what the command line would be. >> >> Thanks so much. >> -John >> >> -----Original Message----- >> From: freesurfer-boun...@nmr.mgh.harvard.edu >> [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas N >> Greve >> Sent: Wednesday, February 15, 2017 5:28 PM >> To: freesurfer@nmr.mgh.harvard.edu >> Subject: Re: [Freesurfer] Question on saving interim files when >> generating an fsavearge >> >> There is not a flag to do this, but you could edit the scripts so that it >> does not delete the tmpdir. >> >> >> On 02/14/2017 09:43 AM, West, John D. wrote: >>> Hello. >>> >>> We are looking to save the interim subject files generated when >>> creating an fsaverage. These seem to be automatically deleted at the >>> end of the process so we were wondering if there is a flag or script >>> that would save these for us? >>> >>> Thanks for your help. >>> >>> *John D. West, M.S.* >>> >>> Principal Systems Analyst | Center for Neuroimaging >>> >>> Indiana University School of Medicine >>> >>> ** >>> >>> 355 West 16^th Street | GH 4100 >>> >>> Indianapolis, IN 46202 >>> >>> 317-963-7510 >>> >>> jdw...@iupui.edu <mailto:jdw...@iupui.edu> >>> >>> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at http://www.partners.org/complianceline . If the e-mail was sent to you in > error but does not contain patient information, please contact the sender and > properly dispose of the e-mail. > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
