Just run it with -qcache only and it will only do qcache
On 03/01/2017 02:48 PM, West, John D. wrote: > Hi Douglas. > > Thanks for the reply. Forgive me for not responding quickly. > > It turns out what we really want is the interim files that are saved during > recon-all if you add the -qcache option. Is there any way to generate those > files after running recon-all without having to run recon-all again in its > entirety? We would also be ok with running the sub command manually if we > could know what the command line would be. > > Thanks so much. > -John > > -----Original Message----- > From: freesurfer-boun...@nmr.mgh.harvard.edu > [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve > Sent: Wednesday, February 15, 2017 5:28 PM > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] Question on saving interim files when generating an > fsavearge > > There is not a flag to do this, but you could edit the scripts so that it > does not delete the tmpdir. > > > On 02/14/2017 09:43 AM, West, John D. wrote: >> Hello. >> >> We are looking to save the interim subject files generated when >> creating an fsaverage. These seem to be automatically deleted at the >> end of the process so we were wondering if there is a flag or script >> that would save these for us? >> >> Thanks for your help. >> >> *John D. West, M.S.* >> >> Principal Systems Analyst | Center for Neuroimaging >> >> Indiana University School of Medicine >> >> ** >> >> 355 West 16^th Street | GH 4100 >> >> Indianapolis, IN 46202 >> >> 317-963-7510 >> >> jdw...@iupui.edu <mailto:jdw...@iupui.edu> >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
