I think you might be doing something wrong during preprocessing. Can you send your command lines?
On 03/06/2017 12:11 PM, Martin Juneja wrote: > Hello experts, > > I am trying to correlate cortical surface area measure with behavioral > measures using instructions from here: > https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysis > <https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysis> > > After I overlay pcc.mgh (partial correlations) and sig.mgh files on > lh.inflated, I see some clusters with high PCC values (Destrieux > atlas) (please see attached figure) at "unlabeled subcortical regions" > for one of the behavioral measures, out of 4. > > Although for volume and thickness versus any behavioral measures, I do > not see any "unlabeled subcortical regions" clusters like this. > > Could you please advise me if its normal to get these clusters? If so, > how can I interpret that? > > Or Am I doing something wrong during preprocessing? If so, any help to > find out where I might be doing wrong and to fix the issue would be > really appreciated. > > Thanks. > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
