See this web page https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Talairach_freeview
On 03/01/2017 09:48 AM, Hari Guragain wrote: > Hi Freesurfer Community, > > I was trying to run the recon-all for one of the subjects. I got > following error message: > "ERROR: mritotal failed, see transforms/talairach.log". > The image seems to have some missing hippocampal area. I wonder If we > can still run the recon-all? > I checked previous archive emails > (https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg40166.html). > It says tkregister can be used to manually align the image. Can anyone > explain properly, how can we use the tkregister to align the image and > save so that the freesurfer cannot complain about the "mritotal failed". > > Thank you in advance, > > Hari > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
