It looks like it found something that it thinks is a DWI parameter but
isn't, and it is causing it to fail. Can you send me one of the dicoms?
In the mean time, if you
setenv FS_LOAD_DWI 0
then the error should go away
On 2/28/17 8:33 AM, Gustav Mårtensson wrote:
Hi,
I have a problem when executing the following command on images
scanned on 1.5T Philips (Intera) in FS 6.0:
recon-all -i
0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164320687_1_S11617_I11073.dcm
-subjid 4450a7a0-27e9-42bc-99ab-1c15519ad9a4 -all -mprage -qcache
-hippocampal-subfields-T1 -brainstem-structures -cw256
which during mri_convert produces the error:
ERROR: GetDICOMInfo(): dcmGetDWIParams() 7
DICOMs from other scanners works fine as far as we know. When
processing them through 5.3.0 we didn't get any errors like this,
regardless of scanner If we just copy the mri_convert binary file from
FS 5.3.0 to FS 6.0 the errors disappears. Would this be the recommend
approach to solve our issues?
We are running on Ubuntu 16.04 LTS with FS version
freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c. I've
included recon-all.log case it is of interest.
Thank you for your help!
--
*Gustav Mårtensson* | PhD student
Division of Clinical Geriatrics
Department of Neurobiology, Care Sciences and Society
Karolinska Institutet
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