Thank you so much Dr. Doug! I just have one more question: Now I want to compute the same information for our second modality (i.e., mean and std intensity of different HP_subfields for our additional scan, e,g., T2 or FLAIR). My question is that how could I use <analysisID>.FSspace.mgz (in mri folder) and T1_to_<analysisID>.v10.Ita (in transform folder) files in mri_segstats command?
Thank you in advance for any help. Best regards, Alireza > On Feb 24, 2017, at 10:51 AM, Douglas N Greve <gr...@nmr.mgh.harvard.edu> > wrote: > > The basic command is > > mri_segstats --seg seg.mgz --default-ctab --sum sum.dat --i input.mgz > > where seg is the hippo sub field seg and input is the input where you > want to get the intensities from (probably norm.mgz). Note that you need > to use the hipp sub field output that is 1mm (not the high res one) > > >> On 02/24/2017 09:53 AM, ali reza mohammadi nejad wrote: >> Dear FreeSurfer Experts, >> I want to compute some intensity information (e.g., mean and std) of each >> Hippocampal subfields (similar to aseg.stats file). >> I think one option could be mri_segstats command, but I am not sure. >> If it works, what are the inputs of this command? >> >> Thank you in advance for any help. >> Alireza >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
