Hi Bruce I tried and still get the same error. Would this mean a space issue? I'm not sure how this is possible as I'm working off a 2Tb drive
trisanna@kaplan:~$ mri_convert ./tmp.mri_nu_correct.mni.1798/nu1.mnc orig_nu.mgz --like orig.mgz --conform mri_convert.bin ./tmp.mri_nu_correct.mni.1798/nu1.mnc orig_nu.mgz --like orig.mgz --conform $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from ./tmp.mri_nu_correct.mni.1798/nu1.mnc... mincRead(): can't find file ./tmp.mri_nu_correct.mni.1798/nu1.mnc -- Ph.D. Candidate McGill University Integrated Program in Neuroscience Psychology On Fri, Feb 24, 2017 at 9:45 AM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > Hi Trisanna > > are you sure you aren't running out of disk space? If not, what happens > when you run the mri_convert command directly on the command line? > > cheers > Bruce > On Thu, 23 Feb 2017, > Trisanna Sprung-Much wrote: > > > Hi All > > > > I am trying to run a subject in 6.0 (it ran perfectly well in 5.3) and > it stops when > > trying to transform to the "conformed" space. I get the following error > after about a > > minute. I have not seen this error before. > > > > mri_convert ./tmp.mri_nu_correct.mni.2860/nu1.mnc orig_nu.mgz --like > orig.mgz > > --conform > > mri_convert.bin ./tmp.mri_nu_correct.mni.2860/nu1.mnc orig_nu.mgz > --like orig.mgz > > --conform > > ncopen: filename "./tmp.mri_nu_correct.mni.2860/nu1.mnc": Not a netCDF > file > > miopen: MINC package entry point > > Error opening ./tmp.mri_nu_correct.mni.2860/nu1.mnc > > mincRead(): error reading volume from file ./tmp.mri_nu_correct.mni.2860/ > nu1.mnc > > $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ > > reading from ./tmp.mri_nu_correct.mni.2860/nu1.mnc... > > Linux kaplan 3.13.0-105-generic #152-Ubuntu SMP Fri Dec 2 15:37:11 UTC > 2016 x86_64 > > x86_64 x86_64 GNU/Linux > > > > recon-all -s icbm-131 exited with ERRORS at Thu Feb 23 11:40:53 EST 2017 > > > > To report a problem, see http://surfer.nmr.mgh.harvard. > edu/fswiki/BugReporting > > > > > > Any ideas? > > > > Best > > > > Trisanna > > -- > > Ph.D. CandidateMcGill University > > Integrated Program in Neuroscience > > Psychology > > > > > > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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