Thank you for this helpful response! One follow-up question - I realize that images should be processed using the same version and OS. For my current study, all images but one have been processed on a previous version of FreeSurfer and it will not be possible for me to process this one remaining image in the same way. I realize this situation is not ideal, but am now wondering what remaining options might be best:
Option 1 - drop this image from my study (which would be unfortunate given the expense associated with collecting the data!) Option 2 - reconstruct this image using the new version of FreeSurfer (and acknowledge this in my paper) - and if I go this route, should I reconstruct the pre-intervention image of this same brain on this new version of FreeSurfer (and re-run the longitudinal processing stream for this one brain). I guess I'm asking how serious it really is to use a different version of FreeSurfer for one participant in the longitudinal stream? Thanks for your help, Linette ________________________________ From: Z K <zkauf...@nmr.mgh.harvard.edu> Sent: February 15, 2017 1:17 PM To: freesurfer@nmr.mgh.harvard.edu; Linette Savage Subject: Re: [Freesurfer] recon-all error Hello Linette, You are getting the dreaded mri_nu_correct.mni correct. This error occurs when using freesurfer version 5.3 on newer linux platforms. This issue has been fixed in the latest release of freesurfer (v6.0) which I recommend you download and install. https://surfer.nmr.mgh.harvard.edu/fswiki/DownloadAndInstall DownloadAndInstall - Free Surfer Wiki<https://surfer.nmr.mgh.harvard.edu/fswiki/DownloadAndInstall> surfer.nmr.mgh.harvard.edu Important Note: When processing a group of subjects for your study, it is essential to process all your subjects with the same version of FreeSurfer, on the same OS ... -Zeke On 02/14/2017 11:13 PM, Linette Savage wrote: > Hello, > > New to freesurfer using Linux (successfully reconstructed several images > on a mac) - can you help me determine how to correct the error in this > attached attempt at a recon? > > Many thanks, > > Linette > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer Freesurfer Info Page - Harvard University<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> mail.nmr.mgh.harvard.edu To see the collection of prior postings to the list, visit the Freesurfer Archives. A searchable archive which of messages PRIOR to March 2004 is at ... > The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error mycompliancereport.com<http://www.partners.org/complianceline> www.partners.org ComplianceLine engages in the business of providing 24-hour toll-free hotlines for the reporting and tracking of compliance concerns to assist in the identification of possible unethical, illegal or questionable behavior. but does not contain patient information, please contact the sender and properly dispose of the e-mail.
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
