This is of course a possibility but the script has been around for years, so it's been run with a range of versions.
________________________________ From: freesurfer-boun...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Antonin Skoch [a...@ikem.cz] Sent: Wednesday, February 15, 2017 6:35 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] tractstats2table error Hi, could not be the issue python version mismatch? tractstats2table is python script, maybe there is a problem. Antonin Hi Adarsh – What operating system are you running this on? It runs fine for me with this input file when I test it on both a mac and a linux computer. a.y From: <freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>> on behalf of Adarsh Nellore <adarsh.nellore...@gmail.com<mailto:adarsh.nellore...@gmail.com>> Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>> Date: Tuesday, February 14, 2017 at 3:19 PM To: "freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>" <freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>> Subject: Re: [Freesurfer] tractstats2table error Hi Anastasia, The file I have seems very similar to the file in that link. I've pasted my file below: # Title Pathway Statistics # # generating_program /usr/local/freesurfer/bin/dmri_pathstats # cvs_version # cmdline /usr/local/freesurfer/bin/dmri_pathstats --intrc /usr/local/freesurfer/subjects/control_data/diffusion_tracs/Control200_recon-all/dpath/fmajor_PP_avg33_mni_flt --dtbase /usr/local/freesurfer/subjects/control_data/diffusion_tracs/Control200_recon-all/dmri/dtifit --path fmajor --subj Control200_recon-all --out /usr/local/freesurfer/subjects/control_data/diffusion_tracs/Control200_recon-all/dpath/fmajor_PP_avg33_mni_flt/pathstats.overall.txt --outvox /usr/local/freesurfer/subjects/control_data/diffusion_tracs/Control200_recon-all/dpath/fmajor_PP_avg33_mni_flt/pathstats.byvoxel.txt # sysname Linux # hostname magbrain # machine x86_64 # user magbrain # anatomy_type pathway # # subjectname Control200_recon-all # pathwayname fmajor # Count 1500 Volume 1206 Len_Min 51 Len_Max 113 Len_Avg 78.2753 Len_Center 70 AD_Avg 0.00117037 AD_Avg_Weight 0.00116289 AD_Avg_Center 0.001153 RD_Avg 0.000596586 RD_Avg_Weight 0.000603718 RD_Avg_Center 0.000548966 MD_Avg 0.000787847 MD_Avg_Weight 0.000790108 MD_Avg_Center 0.000750311 FA_Avg 0.415954 FA_Avg_Weight 0.404395 FA_Avg_Center 0.444513 _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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