Dear Paul, maybe this is implicit, but to assure:
you have also to include -autorecon3. Therefore the full command is: recon-all -s subject_id -autorecon2-cp -autorecon3 -T2pial Antonin Yes, I think so > On Feb 5, 2017, at 2:47 PM, miracoo...@gmail.com wrote: > > Hello, > I ran the entire recon pipeline with T2 option and then added control > points. Do I need to run recon-all -autorecon2-cp with T2 flag to redo the > pial surface or not? Thanks. > Paul >
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