Are you visualizing the output on subject sub003? It looks like fsaverage
On 01/26/2017 06:23 PM, Bronwyn Overs wrote: > Hi Mailing list, > > I have been running the mri_label2label command and have encountered a > problem with the newly generated label. The command I am running is as > follows: > > mri_label2label --srclabel > "$SUBJECTS_DIR/fsaverage/label/lh.sm20.lme.test.B2-0001.label" > --srcsubject fsaverage_mod --trglabel "Test.label" --trgsubject > “sub003" --regmethod surface --hemi lh > > When I visualise the original label there is a distinct temporal ROI > outlined. However, when I load the label for my individual > subject there is no temporal ROI outlined, instead I see numerous > widely dispersed vertices highlighted across the whole surface of the > cortex. Can you identify what the issue is? I have attached images > that show the input and output labels overlayed on an inflated surface. > > > > > > Kind regards, > > Bronwyn Overs > Research Assistant > > Neuroscience Research Australia > > Neuroscience Research Australia > Margarete Ainsworth Building > Barker Street Randwick Sydney NSW 2031 Australia > *M* 0411 308 769 *T* +61 2 9399 1883 *F* +61 2 9399 1265 > > neura.edu.au <http://neura.edu.au> > > Follow @neuraustralia on twitter > <https://twitter.com/neuraustralia>Follow NeuRA on facebook > <https://www.facebook.com/NeuroscienceResearchAustralia>Subscribe to > the NeuRA Magazine <http://www.neura.edu.au/help-research/subscribe> > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
